PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG025042.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 501aa MW: 55822.8 Da PI: 8.05

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG025042.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.2	7.4e-08	195	238	4	45
XCHHHCHHHHHHHHHHHHHHHHH..HHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKka..eieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka ++++Le+ +L++ ++L CCG025042.1 195 AKTLRRLAQNREAARKSRLRKKAraYVQQLETSRIKLSQLEQDL 238 6889*****************96337899999877777766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.4E-4	198	227	No hit	No description
PROSITE pattern	PS00036	0	199	214	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.4E-32	279	354	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MASYRVGETG LSNSVPSNHH LPYALVHGID TPSANFINQE GSAFDFGELE EAIVLQGVQI 60 RNDEAKAPLF TVAARRAATL EMFPSRPIRS QQTPGVGSSK SGGESTDSGS ATNTLSSKAD 120 ALLEPESPIS RKASSSDHYN QAFDQKHLQF QDQQQVDMAN DTSRTGGRPS QQNQSPAKTP 180 QEKRKVSTSE KPLDAKTLRR LAQNREAARK SRLRKKARAY VQQLETSRIK LSQLEQDLQR 240 ARQQGLFFGG CGGAGGNISS GPAIFDMEYA RWLEDDHRHM SELRTGLHSH LSDGELRVIV 300 DGYMSHYDEI FRLKVEAAKS DVFHLITGMW STPAERCFLW MGGFRPSELI KMLISQLDPL 360 TEQQIMGIYS LQQSSQQAEE ALSQGLEQLQ QSLVDTIAGG PVIGGMQQMV VALGKLANLE 420 GFVRQADNLR QQTLHQLRRI LTVRQVARCF LVIGEYYRRL RALSSLWASR PRETMMSEDN 480 SCQTTTDLQM VHPSQNHFAN F

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MASYRVGETG LSNSVPSNHH LPYALVHGID TPSANFINQE GSAFDFGELE EAIVLQGVQI  60
RNDEAKAPLF TVAARRAATL EMFPSRPIRS QQTPGVGSSK SGGESTDSGS ATNTLSSKAD  120
ALLEPESPIS RKASSSDHYN QAFDQKHLQF QDQQQVDMAN DTSRTGGRPS QQNQSPAKTP  180
QEKRKVSTSE KPLDAKTLRR LAQNREAARK SRLRKKARAY VQQLETSRIK LSQLEQDLQR  240
ARQQGLFFGG CGGAGGNISS GPAIFDMEYA RWLEDDHRHM SELRTGLHSH LSDGELRVIV  300
DGYMSHYDEI FRLKVEAAKS DVFHLITGMW STPAERCFLW MGGFRPSELI KMLISQLDPL  360
TEQQIMGIYS LQQSSQQAEE ALSQGLEQLQ QSLVDTIAGG PVIGGMQQMV VALGKLANLE  420
GFVRQADNLR QQTLHQLRRI LTVRQVARCF LVIGEYYRRL RALSSLWASR PRETMMSEDN  480
SCQTTTDLQM VHPSQNHFAN F

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011007183.1	0.0	PREDICTED: transcription factor TGA2 isoform X1
Refseq	XP_011007192.1	0.0	PREDICTED: transcription factor TGA2 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A2K2AXH8	0.0	A0A2K2AXH8_POPTR; Uncharacterized protein
STRING	POPTR_0004s21360.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4555	33	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]