PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024815.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 336aa    MW: 37935 Da    PI: 5.385
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024815.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.85.2e-5461331128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lppGfrFhPtdeelv +yL++kv g ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd++v++ +
  CCG024815.1   6 LPPGFRFHPTDEELVGYYLHRKVLGLEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATQAGYWKATGKDRKVVC-Q 101
                  79****************************.99**************95344555788**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  ++++g +ktLvfy+grap+g +tdWvmheyrl
  CCG024815.1 102 SAVTGYRKTLVFYRGRAPSGDRTDWVMHEYRL 133
                  99****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-624156IPR003441NAC domain
PROSITE profilePS5100558.3786156IPR003441NAC domain
PfamPF023653.0E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELV GYYLHRKVLG LEIELEVIPV IDLYKFDPWE LPEKSFLPKR  60
DMEWFFFCPR DRKYPNGSRT NRATQAGYWK ATGKDRKVVC QSAVTGYRKT LVFYRGRAPS  120
GDRTDWVMHE YRLCDDLSQG SPNFKGAFAL CRVVKKNEQG LKMSDPQGEP KAKRVGSSSS  180
NVDFTSDVVS NEPSNISYGM SSQASYLYNN GNQFSTPIAS PYQVTTVSEL EPAASLESNP  240
PSHWISPELI LDSSKDYPQV HEAASQYFPQ YDYPISMNTW QPDTHGEFSP GSSYSNFTGE  300
IEHADDLSHM GFMSPYSEHG NYMGFGGNDD THYQGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-53516216171NO APICAL MERISTEM PROTEIN
1ut4_B5e-53516216171NO APICAL MERISTEM PROTEIN
1ut7_A5e-53516216171NO APICAL MERISTEM PROTEIN
1ut7_B5e-53516216171NO APICAL MERISTEM PROTEIN
4dul_A5e-53516216171NAC domain-containing protein 19
4dul_B5e-53516216171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011028211.10.0PREDICTED: NAC domain-containing protein 86
RefseqXP_011028212.10.0PREDICTED: NAC domain-containing protein 86
SwissprotO496971e-107NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A3N7G2I20.0A0A3N7G2I2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s08830.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-109NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]