PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG024442.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 121aa    MW: 13218.2 Da    PI: 8.9369
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG024442.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.9e-151461355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+G+r  ++ g+Wv+eIr+p++   ++r++lg+f  +e+Aa+a++ a+++l+g
  CCG024442.1 14 YHGIR--SRGGKWVSEIREPRK---TTRIWLGTFPKPEMAAAAYDVAALALKG 61
                 78885..779*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-241375IPR001471AP2/ERF domain
PROSITE profilePS5103218.7551369IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-261371IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-171370IPR016177DNA-binding domain
PfamPF008471.7E-81461IPR001471AP2/ERF domain
CDDcd000181.00E-131471No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MATTSSNSKR HPMYHGIRSR GGKWVSEIRE PRKTTRIWLG TFPKPEMAAA AYDVAALALK  60
GNGAVLNFPS SAGTYPVPAT ASSTDIPMMI VPSLSLSFIL YLLIDHDDGF QSLFELQFDS  120
P
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029370.12e-85PREDICTED: ethylene-responsive transcription factor ERF027
SwissprotQ1ECI26e-32ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLB9GW612e-46B9GW61_POPTR; Uncharacterized protein
STRINGPOPTR_0003s12120.13e-47(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.19e-28ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]