PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023815.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRF | ||||||||
Protein Properties | Length: 395aa MW: 43613.9 Da PI: 7.6256 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.2 | 9.4e-26 | 147 | 191 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+v++g+k+CErHlhrgr+rsrk++e+ CCG023815.1 147 DPEPGRCRRTDGKKWRCSRDVVAGHKYCERHLHRGRNRSRKPVEN 191 79****************************************997 PP | |||||||
2 | QLQ | 47 | 8e-17 | 80 | 115 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +F+ +Q+q+L+ Q+l+y+ ++a++ +PpeLlq+i+k CCG023815.1 80 YFSLEQWQELELQALIYRFMLAGAAIPPELLQPIKK 115 6*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 9.1E-10 | 79 | 115 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 19.814 | 80 | 115 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.0E-12 | 80 | 113 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.138 | 147 | 191 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.5E-22 | 148 | 190 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MDFHLKQWRN QHEESGQQPS AKMPKLLMDP HQPQQHPHSS GSVAFPLFLP EPSCKTSNLS 60 AFPDSSTAAY TRLPKIMGNY FSLEQWQELE LQALIYRFML AGAAIPPELL QPIKKTLLRS 120 HSPPYFLRHP LQLYYQPSWY WGRAAMDPEP GRCRRTDGKK WRCSRDVVAG HKYCERHLHR 180 GRNRSRKPVE NPSPTISTNI TCFGIGDVGG TASASAFNCS TTPTISEVVN GTRFSHTLES 240 PSIHLNHSSK TESKGVIGLP PPNEVGNRSD GHILWHFFDD WPRSVDESDN INAGSSTNSL 300 TCLSVSMPGN SPASDVSLKL STGNNTAEEE PEPEPEPSPI PRDNTSNWAG AGWGTKITNQ 360 VVTSMGGPLA EALRSSTTKL ISHECSAPVV SPHCF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 5e-36 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. | |||
GenBank | AP015746 | 5e-36 | AP015746.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0702, complete sequence, cultivar: Shumari. | |||
GenBank | AP016085 | 5e-36 | AP016085.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_1041, complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011018896.1 | 0.0 | PREDICTED: growth-regulating factor 3 isoform X2 | ||||
Swissprot | Q8L8A7 | 5e-84 | GRF4_ARATH; Growth-regulating factor 4 | ||||
TrEMBL | B9MTP8 | 0.0 | B9MTP8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s11630.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7895 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 1e-78 | growth-regulating factor 4 |
Publications ? help Back to Top | |||
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