PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG023722.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 620aa MW: 70465.7 Da PI: 9.703 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.8e-09 | 411 | 458 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WTt E +l+d+++q+G+g+W+ I + m Rt+ +++++w+++l CCG023722.1 411 WTTPEVMKLIDGIAQYGTGRWTDIKKLMFsstAYRTPIDLRDKWRNLL 458 ********************************99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-12 | 400 | 461 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.882 | 403 | 462 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-8 | 407 | 460 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.01E-16 | 409 | 459 | No hit | No description |
SuperFamily | SSF46689 | 3.14E-16 | 409 | 483 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-7 | 411 | 458 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 620 aa Download sequence Send to blast |
MDGLDREAHF PKKFASMKCQ RVKVDDSFAP ALEDEAIEVQ HLVAEPKTDN VSVDGGLHSN 60 ITQGPDDLDL GVLDGFLDEV DEVDDIHAVN DFSGAYEDFI LDIELAEKVS YLDYTPRGGS 120 RLRNSSSESQ SPGCSGSSNG AVGMSESSTA TIPKFESKNG WHHKTVKCKL RCSSGDKWNS 180 QEPGEDSMCP TSDDIEDLDE LDDDAKPLIS LVSGKNAKKV VQVAKAGTSV RQKRLRKPTK 240 RYIEELSDPK SKHVMEGKSD LSATFKDKRP KIRSHDELHS GGALTRTPKE PFSENITQAT 300 SKGTDEPLHL RSKPVSERRT NPSFISKDRR WSIRSQNEPY QVRAVKFAPK ELSLTGSSAQ 360 ASFESRPRRG RPKKSLPLSF LESEDDESED DCVKKRTCKK SNDRRKHQRM WTTPEVMKLI 420 DGIAQYGTGR WTDIKKLMFS STAYRTPIDL RDKWRNLLRA SGAQKRKSNK KEVKEKLKDV 480 VRSLPSSVFR RVRELASLHP YPRFSPENFG SFVSDYRPLC IKCSKGSRFE VTPFNLMLSR 540 RVDELIHGHC MPALQFQATV AMSKVMDFRQ TWLKRKQGSS LTRCLTRLAW MFHHHFQLQR 600 VRSHQRVLLQ SFNVEDLERR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU231220 | 0.0 | CU231220.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011018717.1 | 0.0 | PREDICTED: uncharacterized protein LOC105121688 | ||||
Refseq | XP_011018718.1 | 0.0 | PREDICTED: uncharacterized protein LOC105121688 | ||||
TrEMBL | U5GCT1 | 0.0 | U5GCT1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s12820.2 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4716 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 8e-22 | TRF-like 6 |