PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG023601.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 345aa    MW: 38966.1 Da    PI: 9.7132
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG023601.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.1e-181964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v q+G+++W+ Ia++++ gR++++c++rw++ 
      CCG023601.1 19 RGHWRPAEDEKLRQLVDQYGPHNWNFIAEHLQ-GRSGNSCRLRWYNQ 64
                     899*****************************.************96 PP
2Myb_DNA-binding55.41.4e-1772115247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++ +
      CCG023601.1  72 RPFTEEEEERLLRAHHIQGNR-WASIARLFP-GRTDNAVKNHYHVV 115
                      69*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.0361469IPR017930Myb domain
SuperFamilySSF466891.01E-2817112IPR009057Homeodomain-like
SMARTSM007177.5E-161867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-272072IPR009057Homeodomain-like
CDDcd001674.36E-152263No hitNo description
PfamPF139211.0E-172282No hitNo description
SMARTSM007172.6E-1570118IPR001005SANT/Myb domain
PROSITE profilePS5129419.64970120IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2073118IPR009057Homeodomain-like
CDDcd001671.93E-585116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEVFRGSSSS DSGRTSCHRG HWRPAEDEKL RQLVDQYGPH NWNFIAEHLQ GRSGNSCRLR  60
WYNQLDPNIN KRPFTEEEEE RLLRAHHIQG NRWASIARLF PGRTDNAVKN HYHVVMARRK  120
RERCLTVHGK RSNFQIQYPS DHHHRNSSTN PGRNFGFFRP QGSPDLGSKL GFQNNLIERA  180
GNKIPMSSTN SSPSWTNISA STITNDSLSF DVFDSKRKDY IHSSSSSIYP KGGPLALNES  240
LHCTYHPSST IDGGNKYLNV VGKQIPNAKK VVPNNHFAFT SYGDGYGSNK EKIIESQLVR  300
LDSDHHDSAA LWKLPMASQQ EQGDHGGQVK NQDVAFIDFL GVGIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32191197107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707830.0AB970783.1 Populus tremula x Populus tremuloides PtxtMYB026 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031187.10.0PREDICTED: myb-related protein A-like isoform X1
TrEMBLA0A2I4KKW70.0A0A2I4KKW7_POPTR; MYB family protein
STRINGPOPTR_0005s06410.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.12e-59myb domain protein 69