PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022953.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 194aa    MW: 22181 Da    PI: 7.7373
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022953.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.41.1e-24959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+i+n s+r+ t+skRr gi+KKA ELSvLCd++v +++fs++g+l ++ss
  CCG022953.2  9 KKIDNPSRRKLTYSKRRDGIIKKATELSVLCDTDVGLLMFSPNGRLTTFSS 59
                 68***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.24161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-30160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-26275IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-20323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGRNKLPLKK IDNPSRRKLT YSKRRDGIIK KATELSVLCD TDVGLLMFSP NGRLTTFSSN  60
GRIEDIFLRY FDQSNVLEGR SYNPDVVNIN SVHDTNEHRQ FLNDAIRNME KLKMEILHEP  120
LDLQMSGCFQ VPPAATRDAH LTADELVDAN GNWNPPQDDH QPKEAHLPVG PHLSLEYLRT  180
QKHWNLQSRG QGNV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003223.16e-83PREDICTED: uncharacterized protein LOC105110024
TrEMBLA0A3N7FE738e-73A0A3N7FE73_POPTR; Uncharacterized protein
STRINGEOX991893e-50(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1753967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-26AGAMOUS-like 66