PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022729.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 331aa    MW: 36791 Da    PI: 5.5719
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022729.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0013267289123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C ++F +   L  H r+H
  CCG022729.1 267 FECPYCFRVFGSGQALGGHKRSH 289
                  89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.9E-6328IPR007087Zinc finger, C2H2
PROSITE profilePS501578.829431IPR007087Zinc finger, C2H2
SMARTSM003550.19426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-5224289No hitNo description
PROSITE profilePS501579.224224254IPR007087Zinc finger, C2H2
SMARTSM0035554224244IPR015880Zinc finger, C2H2-like
PfamPF139125.6E-11267290IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494267289IPR007087Zinc finger, C2H2
SMARTSM003550.25267289IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280269289IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MERHKCRLCV RTFPNGRALG GHMKAHLAAT RPQPGLDRNE SSSSSYSSSA GEEEVQEEQE  60
IIKIKEAVEE KSLAYGLREN PKKSCRLADP EFSFAVDTGS VVVQDRESET ESRNPTRRRS  120
KRIRKSCGFG ESQKQDFDVK KVVDFKNPSW GESSSPAEPE PVSSVSDTSP EEDVARCLMM  180
LSRDVWMRND EEEVQEQGGK DGEKSVDMLE EAEEIKVNKI RGKFRCEKCM KLFRSSRALS  240
GHKRICSLNA TEARNIAAAG DANDRIFECP YCFRVFGSGQ ALGGHKRSHL IGSSTSTNVA  300
AEVSTKLENN MIDLNLPAPV EDDEFSVVSD A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001488.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLU5GPT80.0U5GPT8_POPTR; C2H2 family protein
STRINGPOPTR_0001s15790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-47C2H2-like zinc finger protein