PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG022455.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 235aa MW: 27043.2 Da PI: 6.3688 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.6e-18 | 29 | 82 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k CCG022455.1 29 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 82 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.1 | 8.5e-42 | 28 | 118 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr++da+k+en++L++++++L++e+ CCG022455.1 28 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFDAVKAENNALQTQNQRLHAEI 118 69**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.13E-20 | 12 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 24 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-17 | 27 | 88 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-15 | 29 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.41E-15 | 29 | 85 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-19 | 31 | 91 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.2E-6 | 55 | 64 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.2E-6 | 64 | 80 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.3E-15 | 84 | 124 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MSFSGIDVCH EEGNGEDELS DDGSQAGEKK RRLNMEQVKT LEKNFELGNK LEPERKMQLA 60 RALGLQPRQI AIWFQNRRAR WKTKQLEKDY DLLKRQFDAV KAENNALQTQ NQRLHAEILA 120 LKSREPTESI NLNKETEGSC SNRSENSSDI KLDISRTPAI DSPLPNHHPT SRPFFPSSSI 180 RPTGIAQLNI NNSSRPDFQC QKMDHIVKEE SLTNMFCSID DQSGFWPWLE QQQFN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 84 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011016455.1 | 1e-174 | PREDICTED: homeobox-leucine zipper protein ATHB-13-like | ||||
Swissprot | Q8LC03 | 1e-99 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | B9HJT5 | 1e-166 | B9HJT5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0008s14770.1 | 1e-167 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 3e-97 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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