PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022424.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 486aa    MW: 53626.9 Da    PI: 6.4293
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022424.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.47.2e-29107164260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +Dgy+WrKYGqK v+g+ef rsYY+Ct+++C+vkk++e+s+ d+k+ +i+Y geH+h+k
  CCG022424.1 107 EDGYRWRKYGQKLVRGNEFIRSYYKCTHPSCQVKKQLECSH-DGKLADIVYIGEHEHPK 164
                  7***************************************9.***************85 PP
2WRKY105.62.6e-33276333259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+++dpk+v++ Yeg+H+h+
  CCG022424.1 276 SDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKLVITSYEGQHDHD 333
                  8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.24101165IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-25102165IPR003657WRKY domain
SuperFamilySSF1182905.75E-23102165IPR003657WRKY domain
SMARTSM007749.2E-32106164IPR003657WRKY domain
PfamPF031064.8E-22107163IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-35261335IPR003657WRKY domain
SuperFamilySSF1182906.8E-29267335IPR003657WRKY domain
PROSITE profilePS5081136.047270335IPR003657WRKY domain
SMARTSM007742.6E-38275334IPR003657WRKY domain
PfamPF031067.2E-26277332IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MVSSEEVPDE VSPKELQKRQ SLDDGTDTKP QTHDVGGHAS QQEGIPASYA PAKSLENTGG  60
RISELDKEGS VSSITPRKVS HTPGSDLRSL LSGQEGRTPI MREKVSEDGY RWRKYGQKLV  120
RGNEFIRSYY KCTHPSCQVK KQLECSHDGK LADIVYIGEH EHPKPQHNLP QAVGCVLSIV  180
EEKPDHLLLT GVEESNEPHP IESTNTSQIS SVTSSEHVNR VQSEPKSIRD EVDVDDDQRT  240
KRRKKSSCND RSTPVDTPTS EPRLVIQTKS EVDIVSDGYR WRKYGQKLVK GNPNPRSYYR  300
CSSPGCPVKK HVERASHDPK LVITSYEGQH DHDMPPSRTI THNTTGLNTC TTTIQNGELG  360
TNSGESNAIS LEMVAYNSSD SNIKLEEKLS FETRNKWKES NSGHESKSCE QQTGNTNATK  420
VSGAANLDIV VNTSPVLAGR STEQHDGESR IEPKENSAAC GVHNITPGPE SNPNEQHVLN  480
SEPVQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-37105336275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774220.0GQ377422.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048957.10.0PREDICTED: WRKY transcription factor 1
RefseqXP_011048958.10.0PREDICTED: WRKY transcription factor 1
RefseqXP_011048960.10.0PREDICTED: WRKY transcription factor 1
SwissprotQ9SI373e-84WRKY1_ARATH; WRKY transcription factor 1
TrEMBLC9DHZ10.0C9DHZ1_9ROSI; WRKY transcription factor 2
STRINGPOPTR_0014s16220.20.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.23e-85zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]