PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG022350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C3H | ||||||||
Protein Properties | Length: 446aa MW: 48323.2 Da PI: 8.0322 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.3 | 1.7e-10 | 52 | 75 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++rtG C yG++C+++H+ CCG022350.1 52 APDCGYYLRTGLCGYGSNCRYNHP 75 589********************9 PP | |||||||
2 | zf-CCCH | 36.5 | 8.4e-12 | 94 | 118 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ CCG022350.1 94 QPDCGYYLKTGTCKYGSTCKYHHPR 118 789********************96 PP | |||||||
3 | zf-CCCH | 34.8 | 2.7e-11 | 140 | 163 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rt Ck+G CkF+H++ CCG022350.1 140 KSCPYYMRTRSCKFGVACKFHHPQ 163 66********************97 PP | |||||||
4 | zf-CCCH | 35.9 | 1.3e-11 | 287 | 313 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+f+ tGtCkyG+ Ck++H++ CCG022350.1 287 PGQPECRHFMSTGTCKYGSDCKYHHPK 313 5789*********************96 PP | |||||||
5 | zf-CCCH | 31.3 | 3.4e-10 | 334 | 358 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ +G+Ck+G++C++ H+ CCG022350.1 334 GQAMCPDYSMYGICKFGPTCRYDHP 358 7899********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.9E-6 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.065 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-8 | 52 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.45E-5 | 54 | 76 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 0.001 | 55 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.643 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-9 | 94 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 95 | 119 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-4 | 97 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.19E-5 | 135 | 164 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.962 | 136 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.029 | 138 | 163 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-9 | 139 | 163 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.5E-4 | 141 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.53 | 286 | 314 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 286 | 313 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 288 | 313 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.63E-7 | 290 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-6 | 292 | 313 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 332 | 359 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.577 | 332 | 360 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 334 | 361 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-6 | 338 | 358 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MPDHNNRQVK SNAVSNQSAD NIEEAIWRLK IHDHQEQGGM AQSSPYPDRP GAPDCGYYLR 60 TGLCGYGSNC RYNHPVCAAL GTQLREELPE RVGQPDCGYY LKTGTCKYGS TCKYHHPRDR 120 NGAGPVSFNV LGLPMRQDEK SCPYYMRTRS CKFGVACKFH HPQPASLGTS FSLTGAAAFG 180 PTGSPLVPSS GLPYVGGLPT WSLTRPPLMS GTNLQGPQAY MPVVVSPPPG IVPVPGWNTY 240 VGNLNPMSSS SILGSNRAYD SRNQGDSGSG GQVHMLSTVS PILPERPGQP ECRHFMSTGT 300 CKYGSDCKYH HPKERIAQLA TNTMGLLGLP SRPGQAMCPD YSMYGICKFG PTCRYDHPLH 360 TYPYNYSLSL PSLSIMDSSL ITYPRMAQAA PVTLSKLPDL IHNPDGASYN KHQNPDTSTK 420 ISDDPTEQAG SPPPHSSQAS SEPSHD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011007757.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q94AD9 | 1e-111 | C3H3_ARATH; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | B9IAL1 | 0.0 | B9IAL1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s15770.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8030 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-106 | C3H family protein |
Publications ? help Back to Top | |||
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