PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG021924.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ARR-B | ||||||||
Protein Properties | Length: 696aa MW: 76743.4 Da PI: 6.7923 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 60.9 | 2.6e-19 | 203 | 247 | 1 | 46 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehv 46 kpr++W+ eLH++Fv av+qL G +kA+Pk+il+lm+v+ Lt+e+ CCG021924.1 203 KPRVVWSVELHRKFVAAVNQL-GVDKAVPKKILDLMNVEKLTRENK 247 79*******************.*********************985 PP | |||||||
2 | Response_reg | 75.4 | 2.2e-25 | 21 | 129 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl vdD+p+ + ll+++l++ +y +v++++++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+g+++++ + + Ga CCG021924.1 21 VLAVDDDPTCLLLLETLLRRCQY-NVTTTSQAITALRMLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDPKLVMKGITHGAC 115 799********************.***************888888*******************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 +l Kp+ +eel + CCG021924.1 116 YYLLKPVRIEELKT 129 ***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.1E-147 | 1 | 681 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.85E-35 | 18 | 146 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.3E-41 | 18 | 156 | No hit | No description |
SMART | SM00448 | 1.4E-31 | 19 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.991 | 20 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.0E-22 | 21 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.06E-22 | 22 | 135 | No hit | No description |
SuperFamily | SSF46689 | 1.27E-11 | 200 | 254 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 200 | 254 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-15 | 203 | 246 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MTIEQGIGDS NIDQFPIGMR VLAVDDDPTC LLLLETLLRR CQYNVTTTSQ AITALRMLRE 60 NKNKFDLVIS DVHMPDMDGF KLLELVGLEM DLPVIMLSAN GDPKLVMKGI THGACYYLLK 120 PVRIEELKTI WQHVIRRKKS SNKDRNSSDN RDKPNQGSSE AVPDQKLHKK RKDQNGDEDE 180 DHDEDEDEHE HEHENEDPTT QKKPRVVWSV ELHRKFVAAV NQLGVDKAVP KKILDLMNVE 240 KLTRENKYRH YLKRISTVAN QQANMVAALG SSDASYLQMN SMSGLGLHGL AGSVRFHSTP 300 FRSLPSSGML DRLNSPAVLG IHGLPSPGVI QLGHVQTAPH TANGPSHFQP VGHPGNNGNI 360 LQGMPMPLVL DQIQSNKGVN YIPELPNHLD DTASFPVSSG STDTKIIAGS SNSPFVGVAN 420 KHLMLEGHGQ GLQDGQKSGK QSSLSAGSLN PGYSSHFPDH GRRNDNWSNA VQSNGAQSDS 480 FTLNDYFKQS TLHPSAIRDR MSTMALQSRN NPCDVSSVST LPIHLQDSKA DLPCRVGVAT 540 VSSHAGQLIN NGSLGWVDRR QDDPYHSNGL SNSINSAIPI NGNGNPNGFN LDPNNLFFQR 600 TTSFISTGPS NFVDTSLMKH NEVECSAMET LVRSKDGYLL GQEKLQDSSV SNNFGSLEDL 660 VSIMINQASP PCLCAFLWRC LCFFLLYFSY KICMRF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 9e-20 | 199 | 256 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN908144 | 0.0 | FN908144.1 Populus x canadensis mRNA for putative B-type response regulator 22 (rr22 gene), cultivar Dorskamp. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011036656.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like isoform X2 | ||||
Swissprot | A2X1N2 | 1e-137 | ORR24_ORYSI; Two-component response regulator ORR24 | ||||
TrEMBL | A0A2K1WUJ0 | 0.0 | A0A2K1WUJ0_POPTR; Two-component response regulator | ||||
STRING | POPTR_0018s02330.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-110 | response regulator 12 |