PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG021275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB | ||||||||
Protein Properties | Length: 430aa MW: 48984 Da PI: 9.0807 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.7 | 4e-11 | 8 | 50 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 rg W +eEd ll + v+++ g++Wk+Ia++++ gRt qc rw CCG021275.1 8 RGGWAKEEDCLLEESVRKFNGRHWKKIAECLP-GRTVSQCFCRW 50 789*****************************.*******8888 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.4e-17 | 60 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g WT+eEd+ + ++v+++G + W+ Ia+ ++ gR +kqc++rw+k+ CCG021275.1 60 KGTWTKEEDDCIMELVRKHGCRKWSVIANSLP-GRVGKQCRERWFKF 105 799*****************************.************97 PP | |||||||
3 | Myb_DNA-binding | 46.4 | 9e-15 | 126 | 169 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +WT+ E+ l +++ +G++ W++Iar ++ gR+++ +k++w+ CCG021275.1 126 RAPWTEKEEMTLTYYHEIYGNK-WAKIARFLP-GRSDNAIKNYWNC 169 569*******************.*********.***********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.438 | 1 | 54 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.6E-13 | 5 | 60 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-10 | 7 | 56 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-9 | 8 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-17 | 10 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.79E-10 | 11 | 54 | No hit | No description |
PROSITE profile | PS51294 | 25.308 | 55 | 110 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-25 | 58 | 167 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-11 | 59 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 60 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.4E-16 | 60 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.24E-12 | 62 | 105 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 116 | 175 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.235 | 121 | 175 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-16 | 125 | 173 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-12 | 126 | 168 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.54E-11 | 128 | 171 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
GPTRSSRRGG WAKEEDCLLE ESVRKFNGRH WKKIAECLPG RTVSQCFCRW DRVLNPAIVK 60 GTWTKEEDDC IMELVRKHGC RKWSVIANSL PGRVGKQCRE RWFKFSAKLI ISFCRWFNHL 120 NPTINRAPWT EKEEMTLTYY HEIYGNKWAK IARFLPGRSD NAIKNYWNCV LKKNLDSYSL 180 HGCTTDLFTV SSPNSYNCAA ELNCLKLKER QSVEKAAFVY ENMELRCSAE MSASGSGKAN 240 GIGKKNEVRK LHMQAEEKSQ NCLHHESQQL STLVCNLDAG EVPSMDTCVM HPISPFCCST 300 PTKYAQSISV NSTSPESILR NSARTFKNTP SIIRKRALRG AAIAKTSDVT CTPSLKFSCA 360 NDFQIVDSTN SPNEKQGFLR YFQPETSFAI KSLKRHFDYA FDMEKEADLG KCGKYIPLSV 420 PLHQNFLESR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 7e-49 | 8 | 175 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-49 | 8 | 175 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011033774.1 | 0.0 | PREDICTED: myb-related protein A-like | ||||
Refseq | XP_011033775.1 | 0.0 | PREDICTED: myb-related protein A-like | ||||
Refseq | XP_011033776.1 | 0.0 | PREDICTED: myb-related protein A-like | ||||
Refseq | XP_011033777.1 | 0.0 | PREDICTED: myb-related protein A-like | ||||
Refseq | XP_011033778.1 | 0.0 | PREDICTED: myb-related protein A-like | ||||
TrEMBL | A0A3N7G6W9 | 0.0 | A0A3N7G6W9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s12390.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13301 | 25 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09370.1 | 2e-67 | myb domain protein 3r-3 |