PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021177.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 263aa    MW: 29516.1 Da    PI: 10.0308
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021177.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.7e-08171211954
                  HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P  +      K++ a++L +A++Y+k L
  CCG021177.1 171 ARHRRERISERIRILQRLVPGgN------KMDTATMLDEAIHYVKFL 211
                  699*****************955......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.977162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-14163220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14166221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-5172211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-5185216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDVDMMKSSS GDEHMDMMTM MMQMEKLPDF FSQPFYNTTN TSTLLQEIQF SNGNPTANTV  60
ASPPIWHNPH ASSPPLINPP CSMPFMGTPI QEPVTPSLQH DMMAKKFRYV TPFSNANSFL  120
SSIEKKNSTT TIREMIFRIA AMQPAHIDPE SVKPPKRKNV KISKDPQSVA ARHRRERISE  180
RIRILQRLVP GGNKMDTATM LDEAIHYVKF LKMQVQSLEQ IGANRPMGGF GFTGVTMPSV  240
GYSSLVKNFD PAANTVGTMQ MLR
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005883.11e-175PREDICTED: uncharacterized protein LOC105112031
SwissprotQ9SND42e-43HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2K2AGH91e-167A0A2K2AGH9_POPTR; Uncharacterized protein
STRINGPOPTR_0005s18210.11e-169(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.14e-39bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]