PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG021012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRF | ||||||||
Protein Properties | Length: 422aa MW: 47303 Da PI: 7.0529 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.8 | 5.1e-25 | 77 | 120 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs++v++++k+CErH+hrgr+rsrk++e CCG021012.1 77 DPEPGRCRRTDGKKWRCSKEVYPDSKYCERHMHRGRNRSRKPVE 120 79***************************************986 PP | |||||||
2 | QLQ | 58 | 2.9e-20 | 13 | 46 | 3 | 36 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTa+Q+++L++Q+l+yKy+++++PvPpeLl ++ CCG021012.1 13 FTATQWHELEHQALIYKYMVSGVPVPPELLYSVK 46 *****************************97775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-11 | 11 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.935 | 12 | 47 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.5E-15 | 13 | 45 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.057 | 77 | 121 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.3E-21 | 78 | 120 | IPR014977 | WRC domain |
Pfam | PF06814 | 1.1E-7 | 362 | 417 | IPR009637 | Lung seven transmembrane receptor-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MLNTTSARNS LLFTATQWHE LEHQALIYKY MVSGVPVPPE LLYSVKRSLE SSLASRLFPH 60 QPTGWVCFQA GVGRKADPEP GRCRRTDGKK WRCSKEVYPD SKYCERHMHR GRNRSRKPVE 120 LASTTTTAAA AAIPLTSINR NLYNNTVSPS SSSYSFSNLP SSMESEIYAH QDSSRSTFLY 180 PHSSSSGPPA GSCFSPQNST THNLFLDCGS SPHADKEYRY SHGIREYVDE RAFFPDALGS 240 ARGVQDSYNQ LTMSSYKGYS QSQFQSFANT SKEEQQQPGH HCFVLGTDII KSSATRSTKL 300 EKEPETQMPL HHFFGEWEPR DADSGLDLAS SSRPHDNGMF EMAFWYFDYA EFNETGIRPT 360 GIFVASEALE LVENVGAVCD FLVRPNLFLV LPVAFLDAFI IIWIFKSLSA TLSKLQVPGL 420 PF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC217588 | 0.0 | AC217588.1 Populus trichocarpa clone POP047-P10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011036429.1 | 0.0 | PREDICTED: growth-regulating factor 5-like | ||||
TrEMBL | A0A2K2B2J2 | 0.0 | A0A2K2B2J2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s06360.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9744 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-60 | growth-regulating factor 5 |