PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG020813.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 439aa MW: 49733.7 Da PI: 6.8525

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG020813.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	397.1	1.8e-121	30	438	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal................ 81 ++lL++cA+ +s++d+++aq+lL++l + +sp+gd+++Rl++ f++AL+ rl+r +a p+++t++ ++++++ CCG020813.1 30 RQLLVSCADLISQSDFSAAQRLLSHLLSTynSSPNGDSTERLVHQFVRALSLRLNR------HANPARSTTTAPLVSNMNSIappppppspctttntn 121 799********************977767*********************......666666666555566655556889999999999999 PP GRAS 82 .....................klfsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesg 153 +++++P+++fshltaNqaIlea++ g++++HiiDfdi++G+QWp+L+qaLa+R+ ++pp+lRiTg g+ CCG020813.1 122 nnkrmvisyesmdqdtlqscyLSLNQITPFIRFSHLTANQAILEAIQvGQQAIHIIDFDIMHGVQWPPLMQALADRSnntlHPPPMLRITGTGH---- 215 9999*****9999875444*******************94669**********************777777*******.... PP GRAS 154 skeeleetgerLakfAeelgvpfefnvl.....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246 + l++t++rL kfA++lg++f+f++l +l+ ++++ + p+EalaVn+vl lhr+l ++ + e +L+ +k l+P+vv+v+e+ea CCG020813.1 216 DLSILHRTEDRLLKFAHSLGLRFQFHPLlllnnDPASLALYLPSAITLLPDEALAVNCVLCLHRFLMDD---SRELLLLLHKIKALNPNVVTVAEREA 310 9**********************9775322235666789999***************9443...334568**************** PP GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344 +hn+ Fl+rfleal++y+alfdslea+lp++s+er vE+ ++grei+++va+eg++rrerh ++e+W+++l+++GF++vpls +a +qaklllr + CCG020813.1 311 NHNHLLFLQRFLEALDHYTALFDSLEATLPPNSKERLAVEQIWFGREIMDIVAAEGERRRERHLRFETWEMMLKSSGFSNVPLSPFALSQAKLLLRLH 408 ********************************************************************************************** PP GRAS 345 k.sdgyrveeesgslvlgWkdrpLvsvSaW 373 + s+gy+++ ++s++lgW++++L+svS+W CCG020813.1 409 YpSKGYQLQIVNNSFFLGWQNHSLFSVSSW 438 **************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.883	3	418	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.2E-119	30	438	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MSSPNSHDHQ EQDQEEEINP PTPTTAFHTR QLLVSCADLI SQSDFSAAQR LLSHLLSTYN 60 SSPNGDSTER LVHQFVRALS LRLNRHANPA RSTTTAPLVS NMNSIAPPPP PPSPCTTTNT 120 NNNKRMVISY ESMDQDTLQS CYLSLNQITP FIRFSHLTAN QAILEAIQVG QQAIHIIDFD 180 IMHGVQWPPL MQALADRSNN TLHPPPMLRI TGTGHDLSIL HRTEDRLLKF AHSLGLRFQF 240 HPLLLLNNDP ASLALYLPSA ITLLPDEALA VNCVLCLHRF LMDDSRELLL LLHKIKALNP 300 NVVTVAEREA NHNHLLFLQR FLEALDHYTA LFDSLEATLP PNSKERLAVE QIWFGREIMD 360 IVAAEGERRR ERHLRFETWE MMLKSSGFSN VPLSPFALSQ AKLLLRLHYP SKGYQLQIVN 420 NSFFLGWQNH SLFSVSSWH

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MSSPNSHDHQ EQDQEEEINP PTPTTAFHTR QLLVSCADLI SQSDFSAAQR LLSHLLSTYN  60
SSPNGDSTER LVHQFVRALS LRLNRHANPA RSTTTAPLVS NMNSIAPPPP PPSPCTTTNT  120
NNNKRMVISY ESMDQDTLQS CYLSLNQITP FIRFSHLTAN QAILEAIQVG QQAIHIIDFD  180
IMHGVQWPPL MQALADRSNN TLHPPPMLRI TGTGHDLSIL HRTEDRLLKF AHSLGLRFQF  240
HPLLLLNNDP ASLALYLPSA ITLLPDEALA VNCVLCLHRF LMDDSRELLL LLHKIKALNP  300
NVVTVAEREA NHNHLLFLQR FLEALDHYTA LFDSLEATLP PNSKERLAVE QIWFGREIMD  360
IVAAEGERRR ERHLRFETWE MMLKSSGFSN VPLSPFALSQ AKLLLRLHYP SKGYQLQIVN  420
NSFFLGWQNH SLFSVSSWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-58	3	438	1	378	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC209044	0.0	AC209044.1 Populus trichocarpa clone POP057-J01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011007026.1	0.0	PREDICTED: scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-138	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	B9GHZ4	0.0	B9GHZ4_POPTR; Uncharacterized protein
STRING	POPTR_0001s47720.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12926	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-139	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]