PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020496.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 412aa    MW: 44508.5 Da    PI: 5.9064
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020496.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-175398147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
      CCG020496.1 53 KGPWSPEEDAVLSQLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 98
                     79******************************.***********985 PP
2Myb_DNA-binding60.43.8e-19105149147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd +++ a++++G++ W++Iar ++ gRt++++k++w++ 
      CCG020496.1 105 RKPFTDEEDRIIIAAHAKHGNK-WAAIARLLP-GRTDNSIKNHWNST 149
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.2314899IPR017930Myb domain
SuperFamilySSF466891.7E-3150146IPR009057Homeodomain-like
SMARTSM007173.2E-1552101IPR001005SANT/Myb domain
PfamPF002497.6E-175398IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2654106IPR009057Homeodomain-like
CDDcd001671.42E-145597No hitNo description
PROSITE profilePS5129426.252100154IPR017930Myb domain
SMARTSM007172.1E-18104152IPR001005SANT/Myb domain
PfamPF002491.1E-16105149IPR001005SANT/Myb domain
CDDcd001674.22E-14107150No hitNo description
Gene3DG3DSA:1.10.10.601.1E-24107153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MQNQTENNND AMRLTEGERE NQMDSPTGGD GGAESGELGG GSGGSGGTNG KVKGPWSPEE  60
DAVLSQLVSK FGARNWSLIA RGIPGRSGKS CRLRWCNQLD PCLKRKPFTD EEDRIIIAAH  120
AKHGNKWAAI ARLLPGRTDN SIKNHWNSTL RRRWADLVRL KPGTSDVMED GSNERTRASS  180
EETLSVCDVN SSLPLEVRDV TMDDQPSQHE DKAQTDNISQ TNEVNFASEP NGNPTLPRPV  240
ARVSAFKVYN PLNDPKLGSG LTRTIPTHGC LVQTPKPDSG SCKILEDVHC EPIVPSRCGY  300
GCCATPSGGH PSSSLLGPEF VEYEEPPPFS SQELISIATD LNNIAWIKSG LENSSTGIPS  360
NAASYRMSQG TSVGSQMGMC EQNLRNGHMR FEEGRNKLMG TMAGTISTQM PA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-39521533104C-Myb DNA-Binding Domain
1msf_C4e-39521533104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2784400.0GU278440.1 Populus balsamifera isolate FBK13 haplotype A myb family transcription factor 109 gene, partial sequence.
GenBankGU2784420.0GU278442.1 Populus balsamifera isolate INU03 haplotype A myb family transcription factor 109 gene, partial sequence.
GenBankGU2784530.0GU278453.1 Populus balsamifera isolate LOV02 haplotype B myb family transcription factor 109 gene, partial sequence.
GenBankGU2784550.0GU278455.1 Populus balsamifera isolate RNA13 haplotype B myb family transcription factor 109 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036027.10.0PREDICTED: transcription factor MYB76-like
SwissprotQ425751e-87MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A2K1YWX00.0A0A2K1YWX0_POPTR; Uncharacterized protein
STRINGPOPTR_0010s20220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.16e-95myb domain protein 109
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]