PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019543.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bZIP

Protein Properties

Length: 379aa MW: 42364.6 Da PI: 5.8076

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019543.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.7	4e-11	136	194	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r + NR +A rs +RK ++ eLe+kv +L++e ++L +l + ++l++e+ CCG019543.2 136 KRAKRIMANRQSAARSKERKARYVSELERKVHTLQTEATTLSAQLTLFQRDTSSLTTEN 194 9*********************************************9999999999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.5E-15	132	196	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.749	134	197	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.04E-10	136	187	No hit	No description
Pfam	PF00170	1.9E-9	136	194	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.3E-10	136	191	No hit	No description
CDD	cd14703	7.10E-24	137	186	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MHDSSNSDAS AFPFRSSCHR RAHSDVPFRV TDELDLVPDE LVSEEDLFCS YMNMEKLGSR 60 PEEGPSGLKQ DNAGIESPSG GGGGVQDEEE EQEKAYVRPR HNHSNSDDGS SLMEPVDSKK 120 AMAPEKLAEL WALDPKRAKR IMANRQSAAR SKERKARYVS ELERKVHTLQ TEATTLSAQL 180 TLFQRDTSSL TTENSELKLR LQAMEQQAQL RDGILYPCSA LNANPCSIVG CIFLWKFLVD 240 NLAFYEVKWK AVVLFRPLNE ALKKEVERLK FTTGEIMTPT DSYNLGIQHI SYNHSPLVSP 300 RPRLGSVDAL NIQIPQFHPL QSNLSPRQPA IAASHSHDLS EMLPQDPLRW LQGFDISSRS 360 SVLVRSECPS ISGSEDSSL

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MHDSSNSDAS AFPFRSSCHR RAHSDVPFRV TDELDLVPDE LVSEEDLFCS YMNMEKLGSR  60
PEEGPSGLKQ DNAGIESPSG GGGGVQDEEE EQEKAYVRPR HNHSNSDDGS SLMEPVDSKK  120
AMAPEKLAEL WALDPKRAKR IMANRQSAAR SKERKARYVS ELERKVHTLQ TEATTLSAQL  180
TLFQRDTSSL TTENSELKLR LQAMEQQAQL RDGILYPCSA LNANPCSIVG CIFLWKFLVD  240
NLAFYEVKWK AVVLFRPLNE ALKKEVERLK FTTGEIMTPT DSYNLGIQHI SYNHSPLVSP  300
RPRLGSVDAL NIQIPQFHPL QSNLSPRQPA IAASHSHDLS EMLPQDPLRW LQGFDISSRS  360
SVLVRSECPS ISGSEDSSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC210382	0.0	AC210382.1 Populus trichocarpa clone POP018-P22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006306.1	0.0	PREDICTED: transcription factor RF2b-like isoform X1
Swissprot	O22873	3e-87	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	B9I8D7	0.0	B9I8D7_POPTR; Uncharacterized protein
STRING	POPTR_0013s09350.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	9e-88	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]