PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018737.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 308aa    MW: 34148 Da    PI: 10.1665
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018737.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31237294359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  CCG018737.2 237 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNHT 294
                  99************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.2E-18188233IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.6E-33223294IPR003657WRKY domain
PROSITE profilePS5081131.009230296IPR003657WRKY domain
SuperFamilySSF1182904.18E-27233294IPR003657WRKY domain
SMARTSM007743.3E-38235295IPR003657WRKY domain
PfamPF031062.7E-27237293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAVELVMGYR NDGFAITSKM EENAVQEAAS GLESVNKLIR LLSQKNQQNL HQSSTSTSRT  60
SMDMEIDCKA VADAAVSKFK KVISLLGRNR TGHARFRRAP VSTPINQRQE LSYQVPEANA  120
KVYYATPIQQ IPPPVLNQNH YPIPLPKNGV ERKDSATTTC AKEWAFQFTN VSQVSSAGKP  180
PLSTSSLKRK CSSENLDSAG KCGSPGRCHC SKKRKMRLKR VVRVPAISLK MSDIPPDDYS  240
WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERALDDP SMLVVTYEGE HNHTISVAET  300
SNLILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-212332951576Probable WRKY transcription factor 4
2ayd_A7e-21223295273WRKY transcription factor 1
2lex_A9e-212332951576Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1482100.0EF148210.1 Populus trichocarpa clone WS0128_M02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005809.10.0PREDICTED: probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX02e-84WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA9PII70.0A9PII7_POPTR; Uncharacterized protein
STRINGPOPTR_0007s10670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-76WRKY DNA-binding protein 7