PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018234.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 249aa    MW: 28211.2 Da    PI: 4.8852
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018234.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-135799754
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                   Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  CCG018234.1 57 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 99
                 57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6985099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-1751114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-1353104No hitNo description
SMARTSM003531.8E-1556105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1656114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-115799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.32E-5171236No hitNo description
CDDcd048732.23E-4174237No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEPIENIGEE YQNYWETKMF LQNEELDSWA IDEAFSGYYD SSSPDGAASS AASKNIVSER  60
NRRKKLNERL FALRAVVPNI SKMDKASIIK DAIDYIQELH DQEKKIQAEL IELESGKSKK  120
NQGGFGVYYN QELPVLLRSK KKKIDYQFCD FGGSKNSPIE LLELRVAYMG ENTLLVSLTC  180
NKRTDTMVKL CEVFESLGLK IITANITTVS GRVLKTVFIE ADEEEKDKLK IRIETAIAAL  240
NDPLSPMSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1455115969Transcription factor MYC2
5gnj_B2e-1455115969Transcription factor MYC2
5gnj_E2e-1455115969Transcription factor MYC2
5gnj_F2e-1455115969Transcription factor MYC2
5gnj_G2e-1455115969Transcription factor MYC2
5gnj_I2e-1455115969Transcription factor MYC2
5gnj_M2e-1455115969Transcription factor MYC2
5gnj_N2e-1455115969Transcription factor MYC2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2271633e-64CU227163.1 Populus EST from severe drought-stressed leaves.
GenBankCU2286163e-64CU228616.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017674.10.0PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV92e-96BH035_ARATH; Transcription factor bHLH35
TrEMBLB9IN671e-177B9IN67_POPTR; BHLH family protein
STRINGXP_009348093.11e-139(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-89bHLH family protein