PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG018036.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family M-type_MADS
Protein Properties Length: 96aa    MW: 10858.6 Da    PI: 9.99
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG018036.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.41.4e-26958150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien+  rqvtf+kRr g+lKKA+ELSvLCdae+ v ifs +gklye +
  CCG018036.1  9 KRIENSVHRQVTFCKRRSGLLKKAKELSVLCDAEIGVFIFSAHGKLYELA 58
                 79*********************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.857161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-29176IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-35160IPR002100Transcription factor, MADS-box
CDDcd002651.48E-40274No hitNo description
PRINTSPR004046.3E-28323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-283859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MARGKVQMKR IENSVHRQVT FCKRRSGLLK KAKELSVLCD AEIGVFIFSA HGKLYELATK  60
GTMQGLIERY MKSSQRTQPE PAAIETQPDM LDDQTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-18192186MEF2 CHIMERA
6byy_B7e-18192186MEF2 CHIMERA
6byy_C7e-18192186MEF2 CHIMERA
6byy_D7e-18192186MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5189141e-121DQ518914.1 Populus tomentosa MADS box transcription factor (MADS2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005433.14e-61PREDICTED: agamous-like MADS-box protein AGL12 isoform X1
RefseqXP_011005434.13e-61PREDICTED: agamous-like MADS-box protein AGL12 isoform X2
SwissprotQ388411e-39AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A2K1Y3T08e-58A0A2K1Y3T0_POPTR; Uncharacterized protein
TrEMBLA0A3N7FWA43e-58A0A3N7FWA4_POPTR; Uncharacterized protein
TrEMBLA0A3N7FZU67e-58A0A3N7FZU6_POPTR; Uncharacterized protein
STRINGPOPTR_0019s10540.13e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.15e-42AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]