PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG017869.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 522aa MW: 57248.8 Da PI: 6.5664

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG017869.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.1e-05	338	359	34	55
TTS-STCHHHHHHHHHHHHHHH CS HLH 34 pskKlsKaeiLekAveYIksLq 55 s++ +Ka++L +A+eY+ksLq CCG017869.1 338 LSERTDKASMLDEAIEYLKSLQ 359 57899****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-6	335	370	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-5	338	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.21E-4	339	363	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MNHCIPDWNL EGDLPVSNQK NPIEPDKELV ELLWRNGQVV LHSQTQRKPH PHVQKHDSPT 60 VRGYDSTLNS SHLIQDDETV SWIHDPLEDS FEKEFCSDFF SELPPPLSDQ ISEEKSAKFD 120 ASKTSHQQQQ LNNNKHPVVP EFPGNPMPPP RIQVQEQNHV SLGGFGKAVN VNFSQFSAPL 180 KVGDFRSSSR QFGGQGSGDF SQGEAREFSV VTVGSSNQTP RDRFLSRASG NAIETGTGLS 240 AGPSIDDPRK VISQSERGKA DQTLDPTATS SSGGSGSSLA RTCKQSAVPS RGQKRKTMDA 300 EESECQSEDA ELDSAVANKP AKRSGSARRS RAAEVHNLSE RTDKASMLDE AIEYLKSLQL 360 QLQVMWMGSG IVPVMFPGVQ HFMSRMGMGM GPPPLPSMQN PMHLPRVPLV DQSISMAPRQ 420 DRAVNCQTPV LNPVNYQDQM QNRTFSDQYA RFMGFHMQAA SQPMNMFQFG SQTVQQDQMM 480 APPNSGGGPL SAGTAASDAP PSGKTGKPFY SLHLPWKNNF SC

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MNHCIPDWNL EGDLPVSNQK NPIEPDKELV ELLWRNGQVV LHSQTQRKPH PHVQKHDSPT  60
VRGYDSTLNS SHLIQDDETV SWIHDPLEDS FEKEFCSDFF SELPPPLSDQ ISEEKSAKFD  120
ASKTSHQQQQ LNNNKHPVVP EFPGNPMPPP RIQVQEQNHV SLGGFGKAVN VNFSQFSAPL  180
KVGDFRSSSR QFGGQGSGDF SQGEAREFSV VTVGSSNQTP RDRFLSRASG NAIETGTGLS  240
AGPSIDDPRK VISQSERGKA DQTLDPTATS SSGGSGSSLA RTCKQSAVPS RGQKRKTMDA  300
EESECQSEDA ELDSAVANKP AKRSGSARRS RAAEVHNLSE RTDKASMLDE AIEYLKSLQL  360
QLQVMWMGSG IVPVMFPGVQ HFMSRMGMGM GPPPLPSMQN PMHLPRVPLV DQSISMAPRQ  420
DRAVNCQTPV LNPVNYQDQM QNRTFSDQYA RFMGFHMQAA SQPMNMFQFG SQTVQQDQMM  480
APPNSGGGPL SAGTAASDAP PSGKTGKPFY SLHLPWKNNF SC

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP689415	1e-31	KP689415.1 Prunus pseudocerasus isolate Unigene5738 bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011026200.1	0.0	PREDICTED: transcription factor PIF4
Refseq	XP_011026201.1	0.0	PREDICTED: transcription factor PIF4
Refseq	XP_011026202.1	0.0	PREDICTED: transcription factor PIF4
Refseq	XP_011026203.1	0.0	PREDICTED: transcription factor PIF4
TrEMBL	B9GSQ9	0.0	B9GSQ9_POPTR; Uncharacterized protein
STRING	POPTR_0002s05630.2	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8146	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	2e-27	phytochrome interacting factor 4