PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017865.3
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 832aa    MW: 91330.4 Da    PI: 6.1174
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017865.3genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23133234199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  CCG017865.3 133 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQTPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 226
                  99****************************97544444..48************************************************..889999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  CCG017865.3 227 LLLGIRRA 234
                  9****997 PP
2Auxin_resp118.55.3e-39259342183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPr+s+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  CCG017865.3 259 AAHAAATNSRFTIFYNPRTSPSEFVIPLVKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 342
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-48118262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-42125248IPR015300DNA-binding pseudobarrel domain
CDDcd100179.35E-22132233No hitNo description
PROSITE profilePS5086312.52133235IPR003340B3 DNA binding domain
PfamPF023627.5E-22133234IPR003340B3 DNA binding domain
SMARTSM010191.7E-24133235IPR003340B3 DNA binding domain
PfamPF065074.3E-34259342IPR010525Auxin response factor
SuperFamilySSF542774.9E-7670753No hitNo description
PfamPF023093.5E-7672761IPR033389AUX/IAA domain
PROSITE profilePS5174522.809679763IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MILSSSSSST TGFNQVTQEG DNKCLNSELW HACAGPLVSL PHVGSRAVYF PQGHSEQVAA  60
STNKEVDAHI PNYPSLPAQL ICQLHNVTMH ADVETDEVYA QMTLQPLSPE DQKDAYLLPA  120
ELGTASKQPS NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP PLDYSQTPPA QELIARDLHD  180
NEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRANRPQTV  240
MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRTSPS EFVIPLVKYV KAVYHTRVSV  300
GMRFRMLFET EESSVRRYMG TITGISDLDP ARWPNSHWRS VKVGWDESTA GERQPRVSLW  360
EIEPLTTFPM YPSAFPMRLK RPWPSGLPSF HGLKDEDLSI NSPVMWLQGG VGDPGVHSLN  420
FQNFGVAPWI QPRFEASMPA LQPDVYQTMA AAALQEMRTV ESSKLASQSL LQFQQSQNLS  480
TGPAASVIPS QCQQQAFSEP LGNPIAASVV SSVPSIMGSL PQDRGHLLNS NGSNPVRSST  540
LLSKQAAFGP QLSSGAAPGV LPQVEQSGTT QSAVSDLATL LAPFSGREYS TYQGDPQNNL  600
LFGVNIDSST FMLQHGIPNL RNIGTENDPL SMPFTASTFT SAPGGDIPLT SDMTASSCID  660
ESGFLQSSEN VDQVNPSTRT FVKVHKSGSY GRSLDISKFS SYDELRSELA RLFCLEGQLE  720
DPQRSVWQLV FVDRENDVLL LGDDPWQEFV NNVWYIKILS PLEVQQMGKE GLTSAASVPS  780
QKLSNSSSDG YMNRQDFRNS SNPDGYLNRQ DFRNSSNGIA SIGSLDYQGR CS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621836343388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1471320.0EF147132.1 Populus trichocarpa clone WS01228_B04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015973235.10.0auxin response factor 6 isoform X1
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLA0A1R3FUU90.0A0A1R3FUU9_COCAP; Auxin response factor
STRINGGSMUA_Achr5P02450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Liu N, et al.
    Down-regulation of AUXIN RESPONSE FACTORS 6 and 8 by microRNA 167 leads to floral development defects and female sterility in tomato.
    J. Exp. Bot., 2014. 65(9): p. 2507-20
    [PMID:24723401]
  2. Minato N, et al.
    The phytoplasmal virulence factor TENGU causes plant sterility by downregulating of the jasmonic acid and auxin pathways.
    Sci Rep, 2014. 4: p. 7399
    [PMID:25492247]
  3. Ortega-Amaro MA, et al.
    Overexpression of AtGRDP2, a novel glycine-rich domain protein, accelerates plant growth and improves stress tolerance.
    Front Plant Sci, 2014. 5: p. 782
    [PMID:25653657]
  4. Wang Y, et al.
    MicroRNA167-Directed Regulation of the Auxin Response Factors GmARF8a and GmARF8b Is Required for Soybean Nodulation and Lateral Root Development.
    Plant Physiol., 2015. 168(3): p. 984-99
    [PMID:25941314]
  5. Barik S, et al.
    Coevolution Pattern and Functional Conservation or Divergence of miR167s and their targets across Diverse Plant Species.
    Sci Rep, 2015. 5: p. 14611
    [PMID:26459056]
  6. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  7. Mlotshwa S,Pruss GJ,MacArthur JL,Reed JW,Vance V
    Developmental Defects Mediated by the P1/HC-Pro Potyviral Silencing Suppressor Are Not Due to Misregulation of AUXIN RESPONSE FACTOR 8.
    Plant Physiol., 2016. 172(3): p. 1853-1861
    [PMID:27688620]
  8. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  9. Zhang GZ, et al.
    Ectopic expression of UGT84A2 delayed flowering by indole-3-butyric acid-mediated transcriptional repression of ARF6 and ARF8 genes in Arabidopsis.
    Plant Cell Rep., 2017. 36(12): p. 1995-2006
    [PMID:29027578]
  10. Zheng K, et al.
    Involvement of PACLOBUTRAZOL RESISTANCE6/KIDARI, an Atypical bHLH Transcription Factor, in Auxin Responses in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1813
    [PMID:29114256]
  11. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  12. Ghelli R, et al.
    A Newly Identified Flower-Specific Splice Variant of AUXIN RESPONSE FACTOR8 Regulates Stamen Elongation and Endothecium Lignification in Arabidopsis.
    Plant Cell, 2018. 30(3): p. 620-637
    [PMID:29514943]