PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG017599.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 210aa MW: 23819.3 Da PI: 9.6545 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63 | 3.4e-20 | 11 | 56 | 3 | 48 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 i k qvtfskRr+g++KKA+EL++LC++++a+++fs+ k + CCG017599.1 11 IPKKNHLQVTFSKRRAGLFKKASELCTLCGVDIAIVVFSPAHKAFS 56 6667778********************************9887655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.0E-31 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.98E-27 | 1 | 80 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.268 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-16 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-16 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-16 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRQKIKIEK IPKKNHLQVT FSKRRAGLFK KASELCTLCG VDIAIVVFSP AHKAFSFGHP 60 DVDSIMDRFL TRNPPPQSSG THQLIEAHRN ANVREHNMQL TQILNQLEAE KRHSETLNQM 120 RKSSRSQCWW EAPVEELGLQ ELEQLRDALE ELKKRLTKQT NKILIESSNS LPFLPVNGTG 180 QVGNFETKPE ICVASTLPHV NNFGYGHGIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-18 | 1 | 87 | 1 | 87 | MEF2C |
5f28_B | 1e-18 | 1 | 87 | 1 | 87 | MEF2C |
5f28_C | 1e-18 | 1 | 87 | 1 | 87 | MEF2C |
5f28_D | 1e-18 | 1 | 87 | 1 | 87 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011005044.1 | 1e-157 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 3e-55 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2K1Z4W3 | 1e-153 | A0A2K1Z4W3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s08740.1 | 1e-155 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-51 | AGAMOUS-like 62 |
Publications ? help Back to Top | |||
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