PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017284.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 676aa    MW: 74200.2 Da    PI: 6.5114
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017284.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-094164531954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  CCG017284.1 416 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 453
                  664459******************************88 PP
2BELL125.12.6e-40278349172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpY++lAl++iS+hFrcL dai++qi
  CCG017284.1 278 ERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYIALALQTISQHFRCLHDAITGQI 349
                  79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.2E-65202347IPR006563POX domain
PfamPF075268.4E-51208346IPR006563POX domain
PROSITE profilePS5007112.163394457IPR001356Homeobox domain
CDDcd000864.42E-13397458No hitNo description
SMARTSM003892.1E-9397461IPR001356Homeobox domain
SuperFamilySSF466892.44E-17398464IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28400463IPR009057Homeodomain-like
PfamPF059204.6E-18414453IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MATYYTSSNN QRDTAAMVYL PGSYPEAPVL HGNMMMYMNS GSYSDNLAGN SHHQNNCIEF  60
QSVENSANPQ QQEILSNLGG SRIGEHDFGA WRDGRNEMLV MQSVSGASSV LHSAQSLQGQ  120
GLSLSLGTQI PSGTQMPSIP YRNTNPGLTS FLSPNFSISG EGGGRIGSSR DEQSRNIEYL  180
TPVFSGGNHD VNKGDLSPYG MNSVGRTIPN SKYLKAAQQL LDEVVNVRKA IKQPDKEKNQ  240
TTSEHGLNSA KEGDSGLKNG ASNPQESTNS PSELSHAERQ ELQNKLTKLL SMLDEVDRRY  300
KQYYHQMQIV VSSFDVIAGC GAAKPYIALA LQTISQHFRC LHDAITGQIR ATRNNLGEQE  360
TSENNKGVGI SRLRYVDQQL RQQRALQQLG MMKQHAWRPQ RGLPESSVSI LRAWLFEHFL  420
HPYPKDSDKI MLARQTGLTR SQVSNWFINA RVRLWKPMVQ EMYKEELGDA EMDSNSSSEN  480
AAKATKGDMG TSEEKGEEFQ QSASSTATGR CSVGQLMDSK SDHVPEVEMA GTTVRSNFHN  540
GTHGETYTEY GLLKLREDQR PGMEDCSLFS DAMAHSEGGG DRFMAAAAAA YQMSEARRFG  600
NGSGVSLTLG LQHCEGGSLP MSGTTHHGFV SMRGDDDIYK AASSVGAAEP TDFECLNPGN  660
RQHRFSSSHV FHDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16403459157Homeobox protein Meis1
4xrs_B1e-16403459157Homeobox protein Meis1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0288611e-120CT028861.1 Poplar cDNA sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011047809.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLA0A2K1Z6R30.0A0A2K1Z6R3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s16660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-139BEL1-like homeodomain 6