PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG017221.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 523aa    MW: 57363.9 Da    PI: 6.7177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG017221.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84e-084087354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                   +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL  +v  +k+L
  CCG017221.2 40 IQKADREKLRRDRLNEHFVELGNTLDPD----RPKNDKATILADTVLLLKDL 87
                 56789********************997....79***********9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.2013787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-1138109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.71E-63887No hitNo description
SuperFamilySSF474591.28E-1138107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-64087IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-54393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
HamapMF_00147_B27.968276516IPR022896Triosephosphate isomerase, bacterial/eukaryotic
PfamPF001211.3E-66344513IPR000652Triosephosphate isomerase
SuperFamilySSF513512.75E-69345515IPR000652Triosephosphate isomerase
PROSITE profilePS5144059.244345515IPR000652Triosephosphate isomerase
Gene3DG3DSA:3.20.20.702.1E-76345516IPR013785Aldolase-type TIM barrel
TIGRFAMsTIGR004193.4E-55346505IPR000652Triosephosphate isomerase
CDDcd003111.30E-95347514IPR000652Triosephosphate isomerase
PROSITE patternPS001710431441IPR020861Triosephosphate isomerase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006096Biological Processglycolytic process
GO:0004807Molecular Functiontriose-phosphate isomerase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MNPCTDFNPP PPVPRHVPSS HTDPISSEAE LKDSVAARKI QKADREKLRR DRLNEHFVEL  60
GNTLDPDRPK NDKATILADT VLLLKDLTSK VDKLKAEHAA LSEESRELTL EKNDLREEKA  120
SLKSDVENLN IQCQQQLRAT YPWAAMDHSV MMAPPSYPFP MPVPMPPGPI PMHPSMQPYP  180
FYGNQNPAVI HNHCSTFVPY IAPNTLFDQQ STQHVSSLAQ SASRSHVSVK QDSKNKSSGE  240
SKVEKSEDSN DVTTDLELKT PGSTADQKGK GPAGFKSGYC VANGPEDRSL CRRVLKRTSL  300
YAHLKFADID VSLVKLEYPN HSRGGDSLVT VTNIRSLESH LALSERSVEQ LKDIGCKWVI  360
LGHSERRHII GEDNQFIGKK AAYALSQGLG VIACIGELLE EREAGKTFDV CYQQLKAFAD  420
AVPSWDNIVI AYEPVWAIGT GVVATPVQAQ EVHVAIRDWL KNNVSAEVAS KTRIIYGGSV  480
NGGNCAELAK QEDIDGFLVG GASLKGPEFA TIVNSVTFKK VAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ohq_A1e-11034452377256Triosephosphate isomerase, chloroplastic
4ohq_B1e-11034452377256Triosephosphate isomerase, chloroplastic
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1476620.0EF147662.1 Populus trichocarpa clone WS0124_D03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046795.10.0PREDICTED: transcription factor bHLH121-like
RefseqXP_011046803.10.0PREDICTED: transcription factor bHLH121-like
TrEMBLB9HRA91e-166B9HRA9_POPTR; Uncharacterized protein
STRINGPOPTR_0009s13220.11e-167(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.23e-72bHLH family protein