PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG016782.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | NAC | ||||||||
Protein Properties | Length: 310aa MW: 35195.2 Da PI: 7.3737 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.8 | 6.2e-34 | 61 | 201 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWk 84 lp+G++F+Ptd+e++ +L++kv ++k ++++ i+ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + +W+ CCG016782.1 61 LPAGVKFDPTDQEIL-GHLEAKVLSDKrklhplIDEFIPsIEGEnGICYTHPENLP-GVSNDGQIRHFFHRPSKAYTTGTRKRRKVHtdedgsETRWH 156 799***********9.789999988885665543333333665557**********.566667778******************744446555788** PP NAM 85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +tgk+++v++ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l CCG016782.1 157 KTGKTRQVFA-GGTVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 201 **********.99************66589**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-38 | 54 | 220 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.126 | 61 | 220 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-15 | 62 | 201 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MTWCSNNSVF ERAIQLATSS SKEDAFVEAE TNEIRRITCP SCGHNFEFQD QGGIIHDLPG 60 LPAGVKFDPT DQEILGHLEA KVLSDKRKLH PLIDEFIPSI EGENGICYTH PENLPGVSND 120 GQIRHFFHRP SKAYTTGTRK RRKVHTDEDG SETRWHKTGK TRQVFAGGTV KGFKKILVLY 180 TNYGRQRKPE KTNWVMHQYH LGDNEEEKDG ELVVSKVFYQ TQPRQCSSSI KDSLDNKSSN 240 QSDLVYNHPL AKNSTDLLEF YNPSYISYDQ GNYSSEIPPQ FLPNLVVQGD GSPFTRLAAE 300 TSKGKLQRKW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP770009 | 0.0 | KP770009.1 UNVERIFIED: Populus tomentosa MYB transcription factor R2R3 type-like (Potri.011G058400) mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011001220.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | O49459 | 1e-119 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A3N7H7P6 | 0.0 | A0A3N7H7P6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0011s05740.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-122 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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