PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016200.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 319aa    MW: 36152.6 Da    PI: 5.1339
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016200.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-092532852355
                  SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  +yp++ee+++L++ +gL+++q+ +WF N+R ++
  CCG016200.1 253 PYPTEEEKAKLSEITGLDQKQINNWFINQRKRH 285
                  8*****************************885 PP
2ELK24.85.2e-09206226222
          ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                  LK  Ll KYsg+L+sL++EF+
  CCG016200.1 206 LKGVLLSKYSGHLSSLRKEFL 226
                  89999***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.9E-1963107IPR005540KNOX1
PfamPF037905.9E-1965103IPR005540KNOX1
SMARTSM012561.0E-26110161IPR005541KNOX2
PfamPF037911.9E-25113160IPR005541KNOX2
PROSITE profilePS512139.551205225IPR005539ELK domain
SMARTSM011881.1E-5205226IPR005539ELK domain
PfamPF037894.6E-8206226IPR005539ELK domain
PROSITE profilePS5007112.098225288IPR001356Homeobox domain
SuperFamilySSF466892.05E-18227296IPR009057Homeodomain-like
SMARTSM003891.8E-12227292IPR001356Homeobox domain
CDDcd000862.54E-14229289No hitNo description
Gene3DG3DSA:1.10.10.606.7E-27230291IPR009057Homeodomain-like
PfamPF059207.4E-17245284IPR008422Homeobox KN domain
PROSITE patternPS000270263286IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEGFYRFNPT ISCSPNDIVR LENLPVDSFT DATTSTNEFH SQVGNLLQAG HAYTPVTGSD  60
MHDVIKTQIA NHPRYPDLVS AYVECRKVGA PPEMVSLLED IGRCSYQINT CYEIGADPEL  120
DQFMESYCEV LHRYKEELSK PFDEATTFLS SIESQLSSLC KGTLTKIFDY GSDEPAWTSE  180
EELSCGEVEA SEIPGSLGFH PSDQNLKGVL LSKYSGHLSS LRKEFLKQRK KGKLPKDAKT  240
LLLDWWNHHY RWPYPTEEEK AKLSEITGLD QKQINNWFIN QRKRHWKPSK DMRFALMESA  300
RSDTAGPTCY GIVGDDIGT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090457e-44AC209045.1 Populus trichocarpa clone POP061-B03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023780.10.0PREDICTED: homeobox protein knotted-1-like 1 isoform X4
SwissprotQ9FP294e-92KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A2I4KKK90.0A0A2I4KKK9_POPTR; TALE family protein
STRINGPOPTR_0013s01000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-80KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]