PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG016102.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB_related

Protein Properties

Length: 1245aa MW: 139365 Da PI: 9.2667

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG016102.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.6	3.4e-09	169	204	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E +++++a + +G++ Wk++a+++ +R+ +++ CCG016102.1 169 QWSEAELQRFYKAYRDHGNN-WKKVAAEVR-NRSVEMV 204 6***************99.*****.99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.137	165	222	IPR017884	SANT domain
SuperFamily	SSF46689	1.5E-8	166	212	IPR009057	Homeodomain-like
SMART	SM00717	2.4E-4	166	214	IPR001005	SANT/Myb domain
Pfam	PF00249	8.6E-8	169	204	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-5	169	204	IPR009057	Homeodomain-like
CDD	cd00167	3.22E-6	170	204	No hit	No description
SMART	SM01135	2.3E-58	739	840	IPR033471	DIRP domain
Pfam	PF06584	1.3E-32	739	839	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1245 aa Download sequence Send to blast
MELRPLPVDE ELKHLFTETL VPDDMVDLTL VGDSYAYLAS LPRPVCDETA TKGLQIKMHP 60 PSQRLVTVYY ESKDKSFRLL RNDWAAIAKE SGFEAGDKIA CWACSHGLGG DFSLLIEKID 120 RSFMAPTRKK SVNKRFMTEV SPEKEVKSSS KNKQQANGKK KLSDKLGTQW SEAELQRFYK 180 AYRDHGNNWK KVAAEVRNRS VEMVETLYSM NRAYLSLPEG TASVVGLIAM MTDHYSVLEA 240 SESEQESNEV PGVLRKLRKR KRPKVQLSAS KEDLQQSHMV ASTDGCLSFL KIAYGRPLHS 300 VGKRTPRFPV SHQHKKDENY VSPKKKHRKS EINADDNDDE HVAALTLTET LQRGDSAQVP 360 QTPHRRTEHM KSSPVQSWDK MPESSPENLC DASIYEHWSE SGTGRGGDDL AYVRDAISLA 420 EMEGIGTVEV HRKGKKFYGK KVRVEKIRNS QSGGGGEACS GTEEDQKVRT LKGKVEIEMS 480 NAKIDEPSCR GQRKRSKKLF SDDKHDDFIG LQTLALVSAM EFESSAQLDE ERTAQTEDDK 540 CSVPESAPTS HHRERTKLSR QKEKATSGVD GINSRKYKLG RYPLISTKPV SEANKQPQSI 600 SNGTLKRKRE ALVSKVLDDE EITPVVKGRH SGQISSPSKQ LNSLELPEGP SFSGDQKNVP 660 NDLATAQVPV ASQVILPTRK GSRRKMDLKR ATIPKVGKSS VNIQKNQINR QDGAIHLKDK 720 LSCILSSPMV RRWCTFEWFY SAVDYPWFAK REFVEYLNHV GLGHIPRLTR VEWGVIRSSL 780 GRPRRFSERF LHEEREKLQQ YRESVRKHYM ELRTGLREGL PTDLARPLSV GQRVIAIHPK 840 TRELHDGGVL TVDHDQCRVQ FDRAELGVEF VKDIDCMPSN PLDNMPEALR RQRISVLPRG 900 MLVNGKSNAG VFTASEHLRN ALSPKNALVK QARVEVNCAI PLAKGVSTEI VNVQGVCSQP 960 SMVAQIQPKE SDVQVLSELN RALDRKEAWL MELKNTNNDI MENPKNGDNY LKYSEPLKNL 1020 AAVLASSALV HLRQHNTYPV NNLPAWLKPP ANSCFSGTPR PHTSSFVSQE SGSAVLEIVR 1080 GSRLKAHNMV DVAVQAISSM KEGEDTFVRI GEALDSMDRR HLGSEYRVQM IRAPEGASGG 1140 LRLQNQLIPS TAEPQVNSNA SRPQSNDSDK TETVIPSELI SSCVAALLMI QTCSERQYPP 1200 SDVAQIIDSA VTSLQPCCPQ NLPIYREIQM CMGRIKTQIL ALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1245 aa Download sequence Send to blast

MELRPLPVDE ELKHLFTETL VPDDMVDLTL VGDSYAYLAS LPRPVCDETA TKGLQIKMHP  60
PSQRLVTVYY ESKDKSFRLL RNDWAAIAKE SGFEAGDKIA CWACSHGLGG DFSLLIEKID  120
RSFMAPTRKK SVNKRFMTEV SPEKEVKSSS KNKQQANGKK KLSDKLGTQW SEAELQRFYK  180
AYRDHGNNWK KVAAEVRNRS VEMVETLYSM NRAYLSLPEG TASVVGLIAM MTDHYSVLEA  240
SESEQESNEV PGVLRKLRKR KRPKVQLSAS KEDLQQSHMV ASTDGCLSFL KIAYGRPLHS  300
VGKRTPRFPV SHQHKKDENY VSPKKKHRKS EINADDNDDE HVAALTLTET LQRGDSAQVP  360
QTPHRRTEHM KSSPVQSWDK MPESSPENLC DASIYEHWSE SGTGRGGDDL AYVRDAISLA  420
EMEGIGTVEV HRKGKKFYGK KVRVEKIRNS QSGGGGEACS GTEEDQKVRT LKGKVEIEMS  480
NAKIDEPSCR GQRKRSKKLF SDDKHDDFIG LQTLALVSAM EFESSAQLDE ERTAQTEDDK  540
CSVPESAPTS HHRERTKLSR QKEKATSGVD GINSRKYKLG RYPLISTKPV SEANKQPQSI  600
SNGTLKRKRE ALVSKVLDDE EITPVVKGRH SGQISSPSKQ LNSLELPEGP SFSGDQKNVP  660
NDLATAQVPV ASQVILPTRK GSRRKMDLKR ATIPKVGKSS VNIQKNQINR QDGAIHLKDK  720
LSCILSSPMV RRWCTFEWFY SAVDYPWFAK REFVEYLNHV GLGHIPRLTR VEWGVIRSSL  780
GRPRRFSERF LHEEREKLQQ YRESVRKHYM ELRTGLREGL PTDLARPLSV GQRVIAIHPK  840
TRELHDGGVL TVDHDQCRVQ FDRAELGVEF VKDIDCMPSN PLDNMPEALR RQRISVLPRG  900
MLVNGKSNAG VFTASEHLRN ALSPKNALVK QARVEVNCAI PLAKGVSTEI VNVQGVCSQP  960
SMVAQIQPKE SDVQVLSELN RALDRKEAWL MELKNTNNDI MENPKNGDNY LKYSEPLKNL  1020
AAVLASSALV HLRQHNTYPV NNLPAWLKPP ANSCFSGTPR PHTSSFVSQE SGSAVLEIVR  1080
GSRLKAHNMV DVAVQAISSM KEGEDTFVRI GEALDSMDRR HLGSEYRVQM IRAPEGASGG  1140
LRLQNQLIPS TAEPQVNSNA SRPQSNDSDK TETVIPSELI SSCVAALLMI QTCSERQYPP  1200
SDVAQIIDSA VTSLQPCCPQ NLPIYREIQM CMGRIKTQIL ALIPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	256	262	LRKRKRP

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214688	1e-117	AC214688.1 Populus trichocarpa clone ACSB193-J04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011023636.1	0.0	PREDICTED: protein ALWAYS EARLY 2-like isoform X1
TrEMBL	A0A2K1XZN1	0.0	A0A2K1XZN1_POPTR; Uncharacterized protein
STRING	POPTR_0013s02120.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding