PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014849.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 282aa    MW: 32576.5 Da    PI: 5.2785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014849.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.3e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l + +   G  +W+ +++  g+ R++k+c++rw +yl
      CCG014849.1 14 RGPWTIEEDHKLTNFILNNGIQCWRMVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding55.51.3e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+ Ed ++++++ +lG++ W++Ia++++ gRt++++k++w++
      CCG014849.1  67 RGGFTKMEDNQIIQLHSRLGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-20564IPR009057Homeodomain-like
PROSITE profilePS5129413.511961IPR017930Myb domain
SuperFamilySSF466892.1E-2811108IPR009057Homeodomain-like
SMARTSM007174.9E-61363IPR001005SANT/Myb domain
PfamPF002492.4E-101461IPR001005SANT/Myb domain
CDDcd001673.60E-41661No hitNo description
PROSITE profilePS5129425.92762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2665116IPR009057Homeodomain-like
SMARTSM007177.3E-1766114IPR001005SANT/Myb domain
PfamPF002498.5E-1667110IPR001005SANT/Myb domain
CDDcd001671.18E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLTNFIL NNGIQCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TKMEDNQIIQ LHSRLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKVLG  120
LDPVTHKPID QTEKDVSGGE DETIQESISL KEQEESLEVK SEDRDQAKSD FVQVRDQKLE  180
QDELKILDET DLLESYEMLC GSLDVGSWIN QETNTSTSYS SQESNNLSAG EFHSIQEDSV  240
SQWIESVDSF LSWDSFSHLD EDLFFLENTQ SNCMKHSVPK RL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045215.10.0PREDICTED: myb-related protein 315
SwissprotP813941e-83MYB15_ANTMA; Myb-related protein 315
TrEMBLB9GIZ90.0B9GIZ9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s36220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-93myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]