PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG014824.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 25801.3 Da PI: 7.6842 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.4 | 8.3e-32 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA+ r+ +Pv+Ga+g++++++++++q++ae CCG014824.1 2 SCNGCRVLRKGCSENCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPSLFQSLLFEACGRTVNPVNGAAGLLWTGNWHVCQAAAE 99 6************************************************************************************************9 PP DUF260 94 lall 97 ++l+ CCG014824.1 100 TVLR 103 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.854 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.4E-27 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSCNGCRVLR KGCSENCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PSLFQSLLFE ACGRTVNPVN GAAGLLWTGN WHVCQAAAET VLRGGTLLPM PELLTGGGGS 120 PSPSSDEASE VEVACTDIWK LQDPNPNHHP RFSISRSRLS PKRKRTEEPV AVKVQHNDLD 180 LGLTPSFSLK GFAYKQEIRR PGTPSMNSAE SVTTNTACFD SAGLGDEGRE TKLLNLFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 166 | PKRKRTE |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214283 | 0.0 | AC214283.1 Populus trichocarpa clone POP036-B20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011015565.1 | 1e-177 | PREDICTED: LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 5e-94 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | U5G4U0 | 1e-162 | U5G4U0_POPTR; LBD family protein | ||||
STRING | POPTR_0007s10010.1 | 1e-163 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-88 | LOB domain-containing protein 38 |