PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014684.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TALE
Protein Properties Length: 309aa    MW: 34952.5 Da    PI: 4.7569
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014684.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-092522852255
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                   +yp+++++  LA+++gL+++q+ +WF N+R ++
  CCG014684.1 252 WPYPTEADKIALAESTGLDQKQINNWFINQRKRH 285
                  69*****************************885 PP
2ELK27.19.6e-10205226122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK+ Llr +++++g+Lk EFs
  CCG014684.1 205 ELKDKLLRRFGSHIGTLKLEFS 226
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.0E-2167111IPR005540KNOX1
PfamPF037901.5E-2069110IPR005540KNOX1
SMARTSM012566.6E-25117168IPR005541KNOX2
PfamPF037912.2E-24122167IPR005541KNOX2
SMARTSM011882.0E-5205226IPR005539ELK domain
PfamPF037899.1E-8205226IPR005539ELK domain
PROSITE profilePS512139.463205225IPR005539ELK domain
PROSITE profilePS5007112.438225288IPR001356Homeobox domain
SuperFamilySSF466892.05E-19226299IPR009057Homeodomain-like
SMARTSM003892.5E-11227292IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.8E-28230289IPR009057Homeodomain-like
PfamPF059206.7E-18245284IPR008422Homeobox KN domain
CDDcd000866.20E-12251289No hitNo description
PROSITE patternPS000270263286IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDGAYGLHST VADYSDKALM SPEDLILQSE YQSLLSSETL RLRIPILGSE ELLSEAASIR  60
TEEDMSALIK AKIASHPCYP RLLGAYIDCQ KVGAPPGIAC FLDEIRREND LFKQGAVSTY  120
WGADPELDEF METYCDLLVK YKSDLERPLD EATTFLNKIE MQLRNLCTGA SIRSLSDEGA  180
PSSDEELSGG EMDMHEAQPS GEDRELKDKL LRRFGSHIGT LKLEFSKKKK KGKLPKEARQ  240
TLVGWWDAHY KWPYPTEADK IALAESTGLD QKQINNWFIN QRKRHWKPSE NLQFAVMDNL  300
SGQFFTEDG
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045284.10.0PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS61e-142KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2K1YNT50.0A0A2K1YNT5_POPTR; Uncharacterized protein
STRINGLus100130371e-163(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-128KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]