PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014499.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 313aa    MW: 35114.2 Da    PI: 9.7174
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014499.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.84.4e-07255296443
                      S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      WTt Ed  l++a k + ++   +W++Ia+ ++ g++   c  r
      CCG014499.1 255 WTTGEDIALLNALKVFSKDvamRWEKIAAAVP-GKSKAACMKR 296
                      ********************************.*******887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.04158211IPR001005SANT/Myb domain
PROSITE profilePS500905.192159195IPR017877Myb-like domain
SuperFamilySSF466891.95E-5160198IPR009057Homeodomain-like
SMARTSM007170.0045251303IPR001005SANT/Myb domain
SuperFamilySSF466894.13E-9252300IPR009057Homeodomain-like
PROSITE profilePS500906.69255301IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.2E-5255300IPR009057Homeodomain-like
CDDcd001671.81E-5255301No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEFLDEDARP RFLFQSRPIP SSLTDTQTQQ KPLNKLFLLL SISLSSLLLL LSFLYLQTEP  60
IRSLLFWVSV SLLVGPFAPS HLTGGDIRVG QGPILEPLEQ EPEFVEEKQA RKKRSKPIRS  120
EEIVKNPIQN VQITNGLSSK GKKAETLASG ENGVVRNERE EWNEEDSEIL KKQMVKNPVG  180
KPRRWEVIAE AFNGRYRVES VIKKAKELGE KKTDDSDSYA IFLKNRKPLD TRAESGSQGL  240
ESDESRQEVG VGLGWTTGED IALLNALKVF SKDVAMRWEK IAAAVPGKSK AACMKRVTEL  300
KRDFRSSKAG SES
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7072120.0JN707212.1 Populus trichocarpa isolate COR02 locus 676503 genomic sequence.
GenBankJN7072170.0JN707217.1 Populus trichocarpa isolate CJU04 locus 676503 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018643.10.0PREDICTED: dnaJ homolog subfamily C member 2
SwissprotQ9ASQ25e-84MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A2K2BXQ50.0A0A2K2BXQ5_POPTR; Uncharacterized protein
STRINGXP_002528771.11e-156(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106861418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.18e-73MYB_related family protein