PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014475.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 371aa    MW: 41834.6 Da    PI: 4.9299
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014475.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.13.5e-5361331128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  lppGfrFhPtdeelv +yL++k++g ++el evi+ +d+yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nratksgyWkatgkd++v++ +
  CCG014475.1   6 LPPGFRFHPTDEELVGYYLQRKAQGLEIEL-EVIPVIDLYKFDPWELPeKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATKSGYWKATGKDRKVVC-N 101
                  79****************************.99**************95344555788**************************************.9 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                   +++g +ktLvfy+grap g +tdWvmheyrl
  CCG014475.1 102 PAVTGYRKTLVFYRGRAPLGDRTDWVMHEYRL 133
                  99****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-614156IPR003441NAC domain
PROSITE profilePS5100557.1366156IPR003441NAC domain
PfamPF023652.8E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELV GYYLQRKAQG LEIELEVIPV IDLYKFDPWE LPEKSFLPKR  60
DMEWFFFCPR DRKYPNGSRT NRATKSGYWK ATGKDRKVVC NPAVTGYRKT LVFYRGRAPL  120
GDRTDWVMHE YRLCDDISLG SPDLKGAFAL CHVVKKNEQG LKISDSQGEP KAKQVGSSSR  180
NVDFTSALIS NEPSNISCDM SSQASYLYNN ESRYSSPITS PCQVTPMSEF EPAASMESYP  240
SSHWISPDLI LDSSKDYSQV HETAAQYLPQ YEYPISMNTW QPDRHREFSP GSSCSNFTGE  300
IEPTDDLNNI GFMSPYSGHG NYLGFGGYDD MQYQGFEPRN QAPICKQASG DVSLGEYGGL  360
WSQEDNMVIV I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51516216171NO APICAL MERISTEM PROTEIN
1ut4_B2e-51516216171NO APICAL MERISTEM PROTEIN
1ut7_A2e-51516216171NO APICAL MERISTEM PROTEIN
1ut7_B2e-51516216171NO APICAL MERISTEM PROTEIN
3swm_A3e-51516219174NAC domain-containing protein 19
3swm_B3e-51516219174NAC domain-containing protein 19
3swm_C3e-51516219174NAC domain-containing protein 19
3swm_D3e-51516219174NAC domain-containing protein 19
3swp_A3e-51516219174NAC domain-containing protein 19
3swp_B3e-51516219174NAC domain-containing protein 19
3swp_C3e-51516219174NAC domain-containing protein 19
3swp_D3e-51516219174NAC domain-containing protein 19
4dul_A2e-51516216171NAC domain-containing protein 19
4dul_B2e-51516216171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2241051e-161CU224105.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018602.10.0PREDICTED: NAC domain-containing protein 86-like isoform X1
RefseqXP_011018603.10.0PREDICTED: NAC domain-containing protein 86-like isoform X1
SwissprotO496971e-105NAC71_ARATH; NAC domain-containing protein 71
TrEMBLU5GS830.0U5GS83_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-107NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]