PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG014309.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 310aa    MW: 34832.4 Da    PI: 8.9356
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG014309.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017727323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++C+++F +   +  H+r+H
  CCG014309.1  7 CKICNRRFANGKAMGGHMRSH 27
                 *******************99 PP
2zf-C2H212.90.00034253275123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kCp C+k+F +   L  H ++H
  CCG014309.1 253 FKCPFCDKVFDSGQALGGHKKVH 275
                  89**********99999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.21527IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785532IPR007087Zinc finger, C2H2
PfamPF139122.3E-8529IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SMARTSM003550.47202224IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743202229IPR007087Zinc finger, C2H2
PfamPF139122.1E-10202226IPR007087Zinc finger, C2H2
SuperFamilySSF576672.16E-8202275No hitNo description
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
SMARTSM003550.0071253275IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.074253280IPR007087Zinc finger, C2H2
PfamPF139127.7E-9253275IPR007087Zinc finger, C2H2
PROSITE patternPS000280255275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEKTRICKIC NRRFANGKAM GGHMRSHLAK LPLPPKPIPP QETYNTPKKS PPSSSSLNYP  60
LLCNKPTQSS RSMKQEVSST VSRPNLATSY DGESETESTR KPTRRRSKRS RKSADEVAES  120
MVKVTESSEQ VSSISYLLAE EDVALCLLML SRDNWSEDAK QVKKEVCEDI KDHQHVNEVE  180
NYEKEDYLFG VTRAKYKSQG KFKCETCKKG FQSYQALGGH RANHKKIKIH EEHEEGNVIG  240
CGEDNRSVGK RIFKCPFCDK VFDSGQALGG HKKVHFSYLP VTNAKIPINL LDLNKPALEG  300
THDDGEVSEA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011018344.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A3N7FSN90.0A0A3N7FSN9_POPTR; Uncharacterized protein
STRINGPOPTR_0001s00800.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-29C2H2-like zinc finger protein