PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG012955.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 342aa    MW: 36282.2 Da    PI: 8.5635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG012955.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32e-11275320655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri  ++ +L++l+P+     +k  s a++Le+Av++Ik Lq
  CCG012955.1 275 SIAERERRTRISGKLKTLQDLVPNM----DKQTSYADMLELAVKHIKGLQ 320
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.075269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14272335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-11273324No hitNo description
Gene3DG3DSA:4.10.280.101.5E-13274332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-9275320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-13275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MYPQPSSSSS SPQKSNLPSG LTRYGSAPGS FLTRAVDSVI GADRELSGLG STPLVGRQQH  60
FSGDSSSITS ESTCKVNPSS CDRKAPKSGG GGGLQRSYGL NEIAHGAGSL VRQRSSPAGF  120
LSHLATENGG FSITRGTGGY NSRNGSGGGP SRLKSQLSFT RQDSLSQISE VSENVVEGIG  180
SDNGSQNSTH SYSAASFGME SWDTTNSIVF SGHPSKQART GDGDIYNCFN ALETQFSLPQ  240
TSLEIATVEK LLQIPEDSVP CKIRAKRGCA THPRSIAERE RRTRISGKLK TLQDLVPNMD  300
KQTSYADMLE LAVKHIKGLQ NEVEKLHKEL EGCSCGCKQS AP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470170.0EF147017.1 Populus trichocarpa clone WS01226_D10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999991.10.0PREDICTED: transcription factor bHLH128-like
RefseqXP_011015174.10.0PREDICTED: transcription factor bHLH128-like
SwissprotQ8H1024e-90BH128_ARATH; Transcription factor bHLH128
TrEMBLB9IAD10.0B9IAD1_POPTR; Uncharacterized protein
STRINGcassava4.1_010743m1e-169(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.19e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]