PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012652.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 529aa MW: 61328.7 Da PI: 6.0979

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012652.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.5	2.3e-15	114	164	35	87
trihelix 35 skkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 ++ ++e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea CCG012652.1 114 GIMVEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 164 56689****************************98..55667*****85 PP
2	trihelix	64.3	2.7e-20	386	471	2	86
trihelix 2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+ e+l i++r++me+r+++ g ++++lWee+++ m++ g+ rs +Ck kwe++n + ++e++kkr++++ +t yf+ le CCG012652.1 386 WTEPEILNFIQLRTSMESRFQEsGYSNEGLWEEIAEEMASLGYDRSMDECKVKWESMNIYLNVTTESNKKRKDQDLRTNDYFQLLE 471 *******************84679******************************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.5E-10	117	165	No hit	No description
PROSITE profile	PS50090	7.073	386	443	IPR017877	Myb-like domain
Pfam	PF13837	8.4E-15	386	472	No hit	No description
CDD	cd12203	1.65E-21	386	450	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MSEHHHQYGL PDLRQLVTGR AHFQGTQQDN EPFFVQSRNL VPQTHHFESI MVGHEAMLPS 60 GLVKLGGRHH DHYCTNATNI TTNNTITSAT IGASSSAGAG TLYGVEMENA TAAGIMVEEH 120 GYQRSGKKCR EKFENLYKYY KKTKEGKAGR QDGKHYRFFR QLEALYGEPS NQVPASETHF 180 ANNTLLYQTP LSNTINQESQ ETFQENKHSE SLSFSNTSEF ETSSSENNDD DLSAIAYNMM 240 NRSTEKQKGV NESQSLAGPK KSWRTKVEDF VDSQMRKLTE KQDAWMEKML KTIEDREYER 300 MCREEEWTKQ ELARFDREHE FWAKERAWIE SRDTALMEAL KKHAEKGPEL SSSVEHIALA 360 TQRHYNNQDS TSAKKIQKDK FNSIIWTEPE ILNFIQLRTS MESRFQESGY SNEGLWEEIA 420 EEMASLGYDR SMDECKVKWE SMNIYLNVTT ESNKKRKDQD LRTNDYFQLL ESYNGMNSSP 480 SNCYLGTQVN DNSCFQVQIN EGDQQQHLWN TNKFDLKLNK EKNQQVWHK

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MSEHHHQYGL PDLRQLVTGR AHFQGTQQDN EPFFVQSRNL VPQTHHFESI MVGHEAMLPS  60
GLVKLGGRHH DHYCTNATNI TTNNTITSAT IGASSSAGAG TLYGVEMENA TAAGIMVEEH  120
GYQRSGKKCR EKFENLYKYY KKTKEGKAGR QDGKHYRFFR QLEALYGEPS NQVPASETHF  180
ANNTLLYQTP LSNTINQESQ ETFQENKHSE SLSFSNTSEF ETSSSENNDD DLSAIAYNMM  240
NRSTEKQKGV NESQSLAGPK KSWRTKVEDF VDSQMRKLTE KQDAWMEKML KTIEDREYER  300
MCREEEWTKQ ELARFDREHE FWAKERAWIE SRDTALMEAL KKHAEKGPEL SSSVEHIALA  360
TQRHYNNQDS TSAKKIQKDK FNSIIWTEPE ILNFIQLRTS MESRFQESGY SNEGLWEEIA  420
EEMASLGYDR SMDECKVKWE SMNIYLNVTT ESNKKRKDQD LRTNDYFQLL ESYNGMNSSP  480
SNCYLGTQVN DNSCFQVQIN EGDQQQHLWN TNKFDLKLNK EKNQQVWHK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC184063	0.0	AC184063.2 Populus trichocarpa clone Pop1-108K13, complete sequence.
GenBank	AC214419	0.0	AC214419.1 Populus trichocarpa clone POP109-H02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002316512.3	0.0	trihelix transcription factor PTL
TrEMBL	A0A2K1YZ63	0.0	A0A2K1YZ63_POPTR; Uncharacterized protein
STRING	POPTR_0008s02580.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	5e-80	Trihelix family protein