PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG012388.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 327aa MW: 35891 Da PI: 5.9816

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG012388.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	237	280	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L++l+P+ K++ +++LekA+ Y+k Lq CCG012388.1 237 IAAKNRRERISERLKVLQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 280 6779*****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.25	230	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-13	231	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-12	232	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.59E-12	236	284	No hit	No description
SMART	SM00353	6.1E-12	236	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-7	237	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MGSVQTCPYN GNVMGDFSSM GSYGFDEYQK VAFHEEGNST SEKTSGLMIK NLAMTSSPSS 60 LGSPSNAISG ELVFQATDHQ VEEAHSLISF KGIGFDNIMH NNGSLLSFEQ SNRVSQTSSQ 120 KDDYSAWEGN LSYNYQWNEM NPKCNTSPRL MEDFNCFQRA GSFISMTEKE NHGDWLYAES 180 TIVADSIQDS ATADASSFHK RPNMGESMQA LKKQCNNATK KPKPKSAAGP AKDLQSIAAK 240 NRRERISERL KVLQDLVPNG SKVDLVTMLE KAISYVKFLQ LQVKVLATDE FWPVQGGKAP 300 DISQVKEAID ALLSSQTKDG NSSSSPK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011015065.1	0.0	PREDICTED: putative transcription factor bHLH086
Swissprot	Q9FJ00	9e-68	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A2K2ARY4	0.0	A0A2K2ARY4_POPTR; Uncharacterized protein
STRING	POPTR_0004s08770.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4937	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	3e-66	RHD SIX-LIKE 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]