PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011910.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 444aa    MW: 48909.4 Da    PI: 8.5465
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011910.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.71.9e-39178253176
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                  +CqvegC+ dls ak+yhr+h+vCe hsk+++v+v+gle+rfCqqCsrfh lsefDe+k+sCrrrL++hn+rrrk+
  CCG011910.1 178 CCQVEGCNLDLSLAKDYHRKHRVCESHSKCQKVIVAGLERRFCQQCSRFHGLSEFDEKKKSCRRRLSDHNARRRKQ 253
                  6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.0E-31172240IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.017176253IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-36177257IPR004333Transcription factor, SBP-box
PfamPF031101.2E-29179252IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEWNGKPHLQ WDWESLIMFN GITTENSKQL SPTDLETDGE KGTDSGFFYS SGSASRSGGS  60
SSDLELAPFS KCSKSASINS SSAGEVKTSK FTLEASKANP SDYNKKEIGK AKTASMSSTI  120
EASGGSGDQL LGLKLGKRIY FEDAGNNVQS SSFSTVPVPS FTSAKKLKSA IQSHRAPCCQ  180
VEGCNLDLSL AKDYHRKHRV CESHSKCQKV IVAGLERRFC QQCSRFHGLS EFDEKKKSCR  240
RRLSDHNARR RKQPGSVHLN SRVSSSLYDE RQPMSLAWDR APLVHARPHA NLTWEGTYIS  300
KFTITKDYIA KPAEIGGNDG QFHLPGFDLT NGIDIQHHHK SNSSLPSKGK GTAAEILNQG  360
LEEYIIPSKV EAAPECLRAL SLLSNNSWGS REPQSISFEQ PMHTNHTTQS VLQVIPQNSP  420
LASSEYWRTE QPSTDSQVHT LTSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-261792521184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234251KKKSCRRRLSDHNARRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002133.10.0PREDICTED: squamosa promoter-binding-like protein 2
TrEMBLA0A2K2BSW30.0A0A2K2BSW3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s13890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.33e-70squamosa promoter binding protein-like 2