PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG011167.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 247aa    MW: 28099.5 Da    PI: 7.45
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG011167.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-145699755
                 HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                   Er+RR+++N+++ eLr  +Pk +      Kl+Ka++L+ A+ YI++Lq
  CCG011167.1 56 VSERKRRRKLNDKLLELRGAVPKiS------KLDKASTLKDAIVYIQDLQ 99
                 67*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-1747114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.5234998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.83E-1252103No hitNo description
Gene3DG3DSA:4.10.280.108.8E-1753115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-1555104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-125699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
METIENIAAD QNYCEMAKMF SNDELKSWTM DQASILSYEY SSSPEGGDST ASKAIVSERK  60
RRRKLNDKLL ELRGAVPKIS KLDKASTLKD AIVYIQDLQE QERRLQAEIM ELESKSLKKD  120
PGFDFEQELP VLLRPKKTRY DQIYDHRAPI SHPIKVHELR VNSMGEKTLL VSLTCGKARD  180
AMIKICEIFE SMKLKIITAN VAIVSGMVKK TVLIEADMEE KDSLKIRIER AFSAVSDPDS  240
HLCIQSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15764ERKRRRKL
25862RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020047.10.0PREDICTED: transcription factor bHLH35-like isoform X1
TrEMBLA0A2K1ZYF11e-167A0A2K1ZYF1_POPTR; Uncharacterized protein
STRINGPOPTR_0006s07410.11e-166(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.19e-50bHLH family protein