PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG011068.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 306aa MW: 34169.7 Da PI: 5.7971

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG011068.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.2	2.3e-30	115	171	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYG K++k+s++prsYYrCt ++C++kk+ver++edp++++itYeg H h CCG011068.1 115 DDGYKWRKYGHKSIKNSPHPRSYYRCTNPRCSAKKQVERCSEDPDTLVITYEGLHLH 171 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	26.28	109	171	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	5.4E-29	111	171	IPR003657	WRKY domain
SuperFamily	SSF118290	7.45E-26	112	171	IPR003657	WRKY domain
SMART	SM00774	4.9E-34	114	173	IPR003657	WRKY domain
Pfam	PF03106	8.2E-25	115	171	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEGVIKSSTW FDHESEDELV RELLDDESPF FFLPKEKNQS KPSTTNEQTI NKLISKVYSG 60 PTIQDIENAL SMSSREDQSQ AVSQARISLL EKGLSKMENN KYTLKLKRCG NGMDDDGYKW 120 RKYGHKSIKN SPHPRSYYRC TNPRCSAKKQ VERCSEDPDT LVITYEGLHL HFTYPYFLSN 180 QPQNGDPPSK KPKGTIPEAE FQAHANQLTP EQAHEYSAHV TSPGSLPSTS TADDNVHESG 240 LEAIGPQGLL EDVVPYMVRN PSNYNVSSNS SSSSYRSPPA SPPSSLSWSP DLSHSFFDIA 300 LDTSIA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-20	115	171	18	74	Probable WRKY transcription factor 4
2lex_A	2e-20	115	171	18	74	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN127370	0.0	JN127370.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY32 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011019846.1	0.0	PREDICTED: probable WRKY transcription factor 49
TrEMBL	B9HBN2	1e-179	B9HBN2_POPTR; Uncharacterized protein
STRING	POPTR_0006s08730.1	1e-180	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7118	34	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	4e-51	WRKY DNA-binding protein 49