PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010577.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRF
Protein Properties Length: 458aa    MW: 50430.7 Da    PI: 9.0124
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010577.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.62.9e-25109153145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCs++v++g+k+CErH+hrgr+rsrk +e+
  CCG010577.1 109 DPEPGRCRRTDGKKWRCSKDVVAGQKYCERHMHRGRQRSRKLVEA 153
                  79****************************************997 PP
2WRC61.71.1e-19338373338
          WRC   3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsr 38 
                  e grCrRtDGKkWRC+r+v++++k+CE H+hrg+++
  CCG010577.1 338 ELGRCRRTDGKKWRCRRDVVANQKYCEMHMHRGSKQ 373
                  679******************************765 PP
3QLQ514.3e-183872337
          QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                 +T++Ql++Lk+Q+l++Ky+aa++ vPp+L+++i++
  CCG010577.1 38 LTDTQLHELKQQALIFKYIAAGLRVPPDLVVPIWH 72
                 79*******************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.5E-93672IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.9353772IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.4E-123871IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.356109153IPR014977WRC domain
PfamPF088791.6E-21110152IPR014977WRC domain
PROSITE profilePS5166720.069336382IPR014977WRC domain
PfamPF088792.0E-16339373IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MERRVSEESA PSMKLSLGIG AGDHGDDDQD DRHVFPQLTD TQLHELKQQA LIFKYIAAGL  60
RVPPDLVVPI WHSVASSSLG SFSGVDIYRQ FPSFVGLSPQ GFDYRQMMDP EPGRCRRTDG  120
KKWRCSKDVV AGQKYCERHM HRGRQRSRKL VEASQTAAAS EKPSPHNSSK NSDNSTTHSS  180
TLAKVSSQIK APPLDNTPAI LTTCTTSCNS DIEITGMSLT TTANADRKNP FTTMTTSIVT  240
SYKNTATMIA SAVHADITAT GNDYKSSINL KRHYIDDRNS NCSNSVTYKG IIDKNCSNKK  300
IKNAGSNISQ GLNFSPKSVL QVQGCGASHI YMNDVELELG RCRRTDGKKW RCRRDVVANQ  360
KYCEMHMHRG SKQHLEASKP AAIPATIPFV PGNVHSYPTM NLPNKADCRS LNTDLCISIP  420
TSPQLIMTND DTRTISNSSD TTISDTMVGT YQNKNLSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011034630.10.0PREDICTED: growth-regulating factor 9
RefseqXP_011034638.10.0PREDICTED: growth-regulating factor 9
TrEMBLA0A2K1XRP90.0A0A2K1XRP9_POPTR; Uncharacterized protein
TrEMBLA0A385JIJ20.0A0A385JIJ2_POPTO; Growth-regulating factor 9
STRINGPOPTR_0014s06750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.12e-50growth-regulating factor 9