PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010525.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 384aa    MW: 43293.9 Da    PI: 5.1525
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010525.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039426123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C ksFs+   L  H+r+H
  CCG010525.1  4 HECKLCFKSFSNGRALGGHMRSH 26
                 78********************9 PP
2zf-C2H214.20.00013249271123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k+F++   L  H  +H
  CCG010525.1 249 YKCETCNKVFKSYQALGGHRASH 271
                  9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.5E-5330No hitNo description
SMARTSM003550.067426IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-6426IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.741431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492249276IPR007087Zinc finger, C2H2
SMARTSM003550.01249271IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.26E-7249271No hitNo description
PfamPF139122.9E-11249273IPR007087Zinc finger, C2H2
PROSITE patternPS000280251271IPR007087Zinc finger, C2H2
SuperFamilySSF576672.26E-7298325No hitNo description
SMARTSM003551.7303325IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-8303325IPR007087Zinc finger, C2H2
PROSITE profilePS501578.6303325IPR007087Zinc finger, C2H2
PROSITE patternPS000280305325IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEKHECKLCF KSFSNGRALG GHMRSHLLKL PVPPKLEDQF PHIEVSEDTE SISSSEEEAE  60
EGQGVEEEEE EEEEDEEEEK GIFYGLRENP KRSIRLVDPE FCFAAADAGS VVLQDRESET  120
ESSKNPTRRR SKRTKRLLEN HHHQYHQQRP RQEQENNNIV KKLELKKMGT VKAAAESSSG  180
QEPEPVSSIS DTTTEEDVAF CLMMLSRDRW KRKEQENQEE DRELEEEVET ETDDSGEFKS  240
CKTKVRGKYK CETCNKVFKS YQALGGHRAS HKKLKVYTPS KEPNLEPTEN AGASTSLPEK  300
KIHGCPFCFR VFSSGQALGG HKRSHVIGVA ASSSTPARSS TKFGDNNLGL IDLNLPAPVD  360
DDDISQADKL SAVSDAEFVS YIKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033847.10.0PREDICTED: zinc finger protein ZAT9-like isoform X2
TrEMBLA0A2I4KKY00.0A0A2I4KKY0_POPTR; C2H2 family protein
STRINGPOPTR_0014s06150.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-43C2H2-like zinc finger protein