PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010255.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 265aa    MW: 29882.8 Da    PI: 9.5959
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010255.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08167207954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri++++  L++l+P       +K++ a++L +A++Y+k L
  CCG010255.1 167 ARHRRERIRERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 207
                  699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-14159218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14162217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-14164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-6168207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.6E-6181212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MEIDLLKSAT EDQMEMMMMI DRFPEFYGAS NVVADHLSPT DQFLDASVSD SSVPHFNTDN  60
PHIANLPPFM NLPSTLSFNS NNSPIQDQSP RAFFSNPSTS RWRGLGELPG TANDYATPSR  120
KKNSMAAMRE MIFRIAAMQP IHIDPESVKP PKRRNVKISK DPQSVAARHR RERIRERIRI  180
LQRLVPGGTK MDTASMLDEA IHYVKFLKNQ VQSLERAQAN RPTATTGIGF PVAMTSGSYL  240
PVGKEYHQQP AHHHHHQNVQ HYGDA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029716.10.0PREDICTED: transcription factor HEC2-like isoform X1
TrEMBLB9MVS41e-167B9MVS4_POPTR; Uncharacterized protein
STRINGPOPTR_0014s02720.11e-167(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.17e-46bHLH family protein