PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG009820.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 267aa MW: 30829.7 Da PI: 4.9155

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG009820.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.2	9e-55	31	158	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv++yLk+k++g+++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v + + CCG009820.1 31 LPPGFRFHPTDEELVNYYLKRKINGQEIEL-DIIPEVDLYKCEPWELAeKsFFPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVNC-Q 126 79**************************.99**********84335566888**********************************.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kktLv+y+grap+g +tdWvmheyrl CCG009820.1 127 NRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 158 999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-64	26	181	IPR003441	NAC domain
PROSITE profile	PS51005	59.873	31	181	IPR003441	NAC domain
Pfam	PF02365	4.3E-30	32	158	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MRVVEIMIMQ KEFAKRVVGH REGKGMSPVG LPPGFRFHPT DEELVNYYLK RKINGQEIEL 60 DIIPEVDLYK CEPWELAEKS FFPSRDPEWY FFGPRDRKYP NGFRTNRATR AGYWKSTGKD 120 RRVNCQNRAI GMKKTLVYYR GRAPQGIRTD WVMHEYRLDD KECEDTSGIQ DSYALCRVFK 180 KNGICSEIEE QGQCASTSLS LMESSRQGVI NDQYETMSPD VPIASSSCVE EEDKDDSWMQ 240 FITDEPWCSS NNAMVGGEEI SPATFTD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-56	21	181	5	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011047785.1	0.0	PREDICTED: NAC domain-containing protein 86 isoform X2
Swissprot	Q9FFI5	3e-90	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	U5FPE3	1e-175	U5FPE3_POPTR; Uncharacterized protein
STRING	POPTR_0015s05450.1	1e-176	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9564	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-136	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]