PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG009169.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 214aa MW: 22233.8 Da PI: 4.4891 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.1e-16 | 50 | 98 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+Wv+eIr+p+ + r++lg+f +e+Aa a++ a+++l+g CCG009169.1 50 FRGVRRRS-SGKWVSEIREPK----KpNRIWLGTFPNPEMAAVAYDVAALALKG 98 89***888.8*********94....468***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 7.7E-33 | 49 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.01 | 49 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-29 | 49 | 108 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.28E-30 | 50 | 108 | No hit | No description |
PRINTS | PR00367 | 2.2E-10 | 50 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-19 | 50 | 108 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.6E-9 | 50 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 88 | 108 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MQDSQPIKTS GPNISGSSGS SGSGTASASA SAAVIAGAIA PRVSGPQRAF RGVRRRSSGK 60 WVSEIREPKK PNRIWLGTFP NPEMAAVAYD VAALALKGQD AELNFPNSAA SLPVPASTSP 120 RDIQAAAASA AAAIGAAKDA LGIPNTGDTN QMEKEIRPTV DDQFVDEDLI FDMPNVLVNM 180 AEGMLLSPPR LDIAGDETTT SDDNAGDQNL WKFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-14 | 50 | 108 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF155937 | 0.0 | EF155937.1 Populus trichocarpa TINY-like protein (TINYL18) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011001062.1 | 1e-152 | PREDICTED: ethylene-responsive transcription factor ERF024-like | ||||
Swissprot | Q9SJR0 | 1e-51 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A9PL87 | 1e-106 | A9PL87_POPTR; TINY-like protein | ||||
STRING | POPTR_0016s02010.1 | 1e-107 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36450.1 | 1e-42 | ERF family protein |