PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG008834.4
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 478aa    MW: 53049.4 Da    PI: 6.6176
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG008834.4genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.12.4e-10192233445
                  XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                   k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  CCG008834.4 192 QKTLRRLAQNREAARKSRLRKKAYVQQLESSGLKLTQLEQEL 233
                  5888*************************9776666665544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.6E-8189252IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.312191235IPR004827Basic-leucine zipper domain
CDDcd147083.80E-21193245No hitNo description
PfamPF001702.1E-7193233IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.31E-7193235No hitNo description
Gene3DG3DSA:1.20.5.1703.2E-8194237No hitNo description
PROSITE patternPS000360196211IPR004827Basic-leucine zipper domain
PfamPF141441.0E-32275349IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MGSRTGAEDE KKAVVMPSFD PQLPISNAIC VEGSTIHPHF ATYFGVFLED DAIDLSPGAV  60
FNSAKERTQA IPSDPLNSGA FDKKQSSSVQ VESRRLPLEK VQRLNRVSIP SVSTENWGET  120
QKLLLENIQQ SNQVSIPSVN TENWGETNMA DASPRTDIST DADTDDKNRR FDQSTALVVS  180
DSSDRSKDKM DQKTLRRLAQ NREAARKSRL RKKAYVQQLE SSGLKLTQLE QELQRARQQG  240
IFVSSSGDQS HSMSGNGAMA FDVEYARWLE EQNRQINELR SAVNSHTGDA ELRIIIDGIM  300
AHYDEVFRLK SNAAKADVFH LLSGMWKTPA ERCFLWLGGF RSSELLKLLG NHLEPLTDQQ  360
LVGIGNLQQS SQQAEDALSQ GMEALQQSLA ETLSSGSLGS SGSSGNVANY MGQMAMAMGK  420
LGTLEGFIRQ ADNLRQQTLQ QMHRILTTRQ SARALLAIHD YFSRLRALSS LWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091061e-143AC209106.1 Populus trichocarpa clone POP088-K11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000603.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_011000604.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_011000605.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_011000606.10.0PREDICTED: transcription factor TGA2-like isoform X1
RefseqXP_011000607.10.0PREDICTED: transcription factor TGA2-like isoform X1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A2K2BRJ00.0A0A2K2BRJ0_POPTR; Uncharacterized protein
TrEMBLA0A385JHK20.0A0A385JHK2_POPTO; TGACG motif-binding factor 6
STRINGPOPTR_0001s06700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-145TGACG motif-binding factor 6