PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG008131.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 245aa MW: 27739.6 Da PI: 5.8896

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG008131.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.8	3.1e-30	52	110	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d +v++itY+++Hnh+ CCG008131.1 52 SDFWSWRKYGQKPIKGSPHPRGYYRCSTSkGCSAKKQVERCRTDASVLIITYTSNHNHP 110 699*********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-31	45	112	IPR003657	WRKY domain
SuperFamily	SSF118290	6.93E-26	49	112	IPR003657	WRKY domain
SMART	SM00774	8.4E-36	51	111	IPR003657	WRKY domain
PROSITE profile	PS50811	30.94	52	112	IPR003657	WRKY domain
Pfam	PF03106	3.6E-25	53	110	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDGSPSRKLD SNVSEHTQEI QTSKRRKVVE KTFVRVRIGK NAGKLKNEGP PSDFWSWRKY 60 GQKPIKGSPH PRGYYRCSTS KGCSAKKQVE RCRTDASVLI ITYTSNHNHP GPDLHESSLN 120 QLSKDPETPP TDHVDHPTTP KQEKPEEETE EEHGHPIVPS ADENAGEGNS FHYLQSPIRI 180 SQDIMISQED PFAENPEKSH DTLGIVLDEE PISCSKLMTF SAPKSEENND FFDELEELPH 240 IFVFH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-20	53	112	18	79	Disease resistance protein RRS1
5w3x_D	2e-20	53	112	18	79	Disease resistance protein RRS1
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Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ377423	0.0	GQ377423.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011042262.1	0.0	PREDICTED: probable WRKY transcription factor 69
Refseq	XP_011042263.1	0.0	PREDICTED: probable WRKY transcription factor 69
Refseq	XP_011042264.1	0.0	PREDICTED: probable WRKY transcription factor 69
TrEMBL	B9GST5	1e-170	B9GST5_POPTR; WRKY family protein
STRING	POPTR_0002s19630.1	1e-171	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9708	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.2	1e-34	WRKY DNA-binding protein 69