PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG007803.1 | ||||||||
Common Name | SUP1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 213aa MW: 23840.7 Da PI: 7.797 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.6 | 2.3e-05 | 56 | 78 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F+++ L H+++H CCG007803.1 56 YTCSFCRREFKSPQALGGHMNVH 78 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.47E-6 | 53 | 82 | No hit | No description |
PROSITE profile | PS50157 | 11.032 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0045 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MERNSFSSSL EDHSIGSEAC NNTNSNKKLR DSWNLSSCQS FGEDYLDSLS WPPRSYTCSF 60 CRREFKSPQA LGGHMNVHRR DRARLRRSPP RDAQCPVPNL SPNPSLCPPF TRTLPSLVSP 120 PLSALSTPPL ASEVKKWTID GTILDPSSSE LSDLTTTGTR KSFFTTENFG GFTQQDGFKI 180 WKKAEIVRLD LEIGLVRDSK DELDLELRLG SLN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 51 | 78 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 51 | 78 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC831757 | 0.0 | KC831757.1 Populus euphratica isolate b SUP1 (SUP1) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011030533.1 | 1e-154 | PREDICTED: transcriptional regulator SUPERMAN | ||||
TrEMBL | M9W6M7 | 1e-150 | M9W6M7_POPEU; SUP1 | ||||
TrEMBL | M9WE19 | 1e-150 | M9WE19_POPEU; SUP1 | ||||
STRING | POPTR_0010s08530.1 | 1e-109 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2843 | 31 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23130.1 | 2e-16 | C2H2 family protein |
Publications ? help Back to Top | |||
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