PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG007681.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 177aa MW: 18793 Da PI: 5.2322

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG007681.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.6	8.5e-15	14	61	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ g+Wv+eIr+p++ ++r++lg+f +e+Aa+a++ a+++l+g CCG007681.1 14 YHGIR--SRGGKWVSEIREPRK---TTRIWLGTFPKPEMAAAAYDVAALALKG 61 78885..779*******843...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.55E-17	13	70	IPR016177	DNA-binding domain
SMART	SM00380	1.6E-24	13	75	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.755	13	69	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.5E-25	13	71	IPR001471	AP2/ERF domain
Pfam	PF00847	3.8E-8	14	61	IPR001471	AP2/ERF domain
CDD	cd00018	1.84E-13	14	71	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MATTSSNSKR HPMYHGIRSR GGKWVSEIRE PRKTTRIWLG TFPKPEMAAA AYDVAALALK 60 GNGAVLNFPS SAGTYPVPAT ASSTDIRKAA AAAAAVKKAE LSYNEALVDQ PGNDHNAIGA 120 YLASSGEEFV DEEALFDMPN LLVDMAGGML LSPPRITSPP SDDSQGNSDG ESLWSYF

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011014149.1	1e-128	PREDICTED: ethylene-responsive transcription factor ERF026-like
Refseq	XP_011014150.1	1e-128	PREDICTED: ethylene-responsive transcription factor ERF026-like
Swissprot	Q9FJ90	2e-51	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	B9GKP1	1e-109	B9GKP1_POPTR; Uncharacterized protein
STRING	POPTR_0001s08740.1	1e-110	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF562	32	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	4e-48	ERF family protein

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]